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Erik Ziegler
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Removed extraneous quotation marks
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examples/dmri_group_connectivity_camino.py

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====================
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The title for the final grouped-network connectome file is dependent on the group names. The resulting file for this example
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is 'parkinsons-controls.cff'. The following code implements the format a-b-c-...x.cff for an arbitary number of groups.
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"""
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"""
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.. warning::
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The 'info' dictionary below is used to define the input files. In this case, the diffusion weighted image contains the string 'dwi'.
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The same applies to the b-values and b-vector files, and this must be changed to fit your naming scheme.
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"""
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"""
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This line creates the processing workflow given the information input about the groups and subjects.
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.. seealso::
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* nipype/workflows/dmri/camino/connectivity_mapping.py
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* :ref:`dmri_connectivity`
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"""
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"""
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The purpose of the second-level workflow is simple: It is used to merge each
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subject's CFF file into one, so that there is a single file containing all of the
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networks for each group. This can be useful for performing Network Brain Statistics

examples/dmri_group_connectivity_mrtrix.py

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====================
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The title for the final grouped-network connectome file is dependent on the group names. The resulting file for this example
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is 'parkinsons-controls.cff'. The following code implements the format a-b-c-...x.cff for an arbitary number of groups.
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"""
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"""
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.. warning::
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The 'info' dictionary below is used to define the input files. In this case, the diffusion weighted image contains the string 'dwi'.
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The 'info' dictionary below is used to define the input files. In this case, the diffusion weighted image contains the string 'dti'.
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The same applies to the b-values and b-vector files, and this must be changed to fit your naming scheme.
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"""
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"""
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The workflow is created given the information input about the groups and subjects.
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.. seealso::
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* nipype/workflows/dmri/mrtrix/connectivity_mapping.py
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* :ref:`dmri_connectivity_advanced`
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"""
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"""
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We set values for absolute threshold used on the fractional anisotropy map. This is done
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in order to identify single-fiber voxels. In brains with more damage, however, it may be necessary
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to reduce the threshold, since their brains are have lower average fractional anisotropy values.
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"""
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"""
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We invert the b-vectors in the encoding file, and set the
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maximum harmonic order of the pre-tractography spherical deconvolution step. This is
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done to show how to set inputs that will affect both groups.
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"""
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We invert the b-vectors in the encoding file, and set the maximum harmonic order
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of the pre-tractography spherical deconvolution step. This is done to show
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how to set inputs that will affect both groups.
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"""
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Next we create and run the second-level pipeline. The purpose of this workflow is simple:
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It is used to merge each subject's CFF file into one, so that there is a single file containing
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all of the networks for each group. This can be useful for performing Network Brain Statistics

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