1
- # Generated by Neurodocker v0.3.1-19-g8d02eb4 .
1
+ # Generated by Neurodocker v0.3.2 .
2
2
#
3
3
# Thank you for using Neurodocker. If you discover any issues
4
4
# or ways to improve this software, please submit an issue or
5
5
# pull request on our GitHub repository:
6
6
# https://github.com/kaczmarj/neurodocker
7
7
#
8
- # Timestamp: 2017-11-08 20:40:41
8
+ # Timestamp: 2017-12-28 23:39:47
9
9
10
10
FROM neurodebian:stretch-non-free
11
11
@@ -62,14 +62,14 @@ RUN apt-get update -qq && apt-get install -yq --no-install-recommends libxext6 l
62
62
&& apt-get clean \
63
63
&& rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* \
64
64
&& echo "Downloading MATLAB Compiler Runtime ..." \
65
- && curl -sSL -o /tmp/mcr.zip https://www.mathworks.com/supportfiles/downloads/R2017a/deployment_files/R2017a/installers/glnxa64/MCR_R2017a_glnxa64_installer.zip \
65
+ && curl -sSL --retry 5 - o /tmp/mcr.zip https://www.mathworks.com/supportfiles/downloads/R2017a/deployment_files/R2017a/installers/glnxa64/MCR_R2017a_glnxa64_installer.zip \
66
66
&& unzip -q /tmp/mcr.zip -d /tmp/mcrtmp \
67
67
&& /tmp/mcrtmp/install -destinationFolder /opt/mcr -mode silent -agreeToLicense yes \
68
68
&& rm -rf /tmp/*
69
69
70
70
# Install standalone SPM
71
71
RUN echo "Downloading standalone SPM ..." \
72
- && curl -sSL -o spm.zip http://www.fil.ion.ucl.ac.uk/spm/download/restricted/utopia/dev/spm12_latest_Linux_R2017a.zip \
72
+ && curl -sSL --retry 5 - o spm.zip http://www.fil.ion.ucl.ac.uk/spm/download/restricted/utopia/dev/spm12_latest_Linux_R2017a.zip \
73
73
&& unzip -q spm.zip -d /opt \
74
74
&& chmod -R 777 /opt/spm* \
75
75
&& rm -rf spm.zip \
@@ -90,7 +90,7 @@ ENV CONDA_DIR=/opt/conda \
90
90
PATH=/opt/conda/bin:$PATH
91
91
RUN echo "Downloading Miniconda installer ..." \
92
92
&& miniconda_installer=/tmp/miniconda.sh \
93
- && curl -sSL -o $miniconda_installer https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh \
93
+ && curl -sSL --retry 5 - o $miniconda_installer https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh \
94
94
&& /bin/bash $miniconda_installer -b -p $CONDA_DIR \
95
95
&& rm -f $miniconda_installer \
96
96
&& conda config --system --prepend channels conda-forge \
@@ -102,6 +102,7 @@ RUN echo "Downloading Miniconda installer ..." \
102
102
# Create conda environment
103
103
# -------------------------
104
104
RUN conda create -y -q --name neuro python=3.6 \
105
+ pytest \
105
106
jupyter \
106
107
jupyterlab \
107
108
jupyter_contrib_nbextensions \
@@ -110,6 +111,7 @@ RUN conda create -y -q --name neuro python=3.6 \
110
111
matplotlib \
111
112
scikit-learn \
112
113
seaborn \
114
+ nbformat \
113
115
&& sync && conda clean -tipsy && sync \
114
116
&& /bin/bash -c "source activate neuro \
115
117
&& pip install -q --no-cache-dir https://github.com/nipy/nipype/tarball/master \
@@ -208,10 +210,10 @@ RUN echo '{ \
208
210
\n [ \
209
211
\n "miniconda", \
210
212
\n { \
211
- \n "conda_install": "python=3.6 jupyter jupyterlab jupyter_contrib_nbextensions traits pandas matplotlib scikit-learn seaborn", \
213
+ \n "conda_install": "python=3.6 pytest jupyter jupyterlab jupyter_contrib_nbextensions traits pandas matplotlib scikit-learn seaborn nbformat ", \
212
214
\n "pip_install": "https://github.com/nipy/nipype/tarball/master https://github.com/INCF/pybids/tarball/master nilearn datalad[full] nipy duecredit", \
213
215
\n "env_name": "neuro", \
214
- \n "activate": "True" \
216
+ \n "activate": true \
215
217
\n } \
216
218
\n ], \
217
219
\n [ \
@@ -276,6 +278,6 @@ RUN echo '{ \
276
278
\n ] \
277
279
\n ] \
278
280
\n ], \
279
- \n "generation_timestamp": "2017-11-08 20:40:41 ", \
280
- \n "neurodocker_version": "0.3.1-19-g8d02eb4 " \
281
+ \n "generation_timestamp": "2017-12-28 23:39:47 ", \
282
+ \n "neurodocker_version": "0.3.2 " \
281
283
\n }' > /neurodocker/neurodocker_specs.json
0 commit comments