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stripped out fileformats
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‎.github/workflows/ci-cd.yaml

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@@ -99,13 +99,9 @@ jobs:
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- name: Install task package
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run: |
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pip install ${{ matrix.pip-flags }} "./related-packages/fileformats[dev]"
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pip install ${{ matrix.pip-flags }} "related-packages/fileformats-extras[dev]"
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pip install ${{ matrix.pip-flags }} ".[dev]"
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python -c "import pydra.tasks.ants as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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python -c "import fileformats.medimage_ants as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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python -c "import fileformats.extras.medimage_ants as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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test:
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needs: [nipype-conv]
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- name: Install task package
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run: |
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pip install "./related-packages/fileformats" "./related-packages/fileformats-extras" ".[test]"
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pip install ".[test]"
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python -c "import pydra.tasks.ants as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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python -c "import pydra as m; print(f'{m.__name__} {m.__version__} @ {m.__file__}')"
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- name: Test with pytest
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run: >-
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pytest -sv
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./pydra/tasks/ants
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./related-packages/fileformats
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./related-packages/fileformats-extras
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--cov pydra.tasks.ants
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--cov fileformats.medimage_ants
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--cov fileformats.extras.medimage_ants
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--cov-report xml
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- name: Upload to CodeCov
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files: coverage.xml
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name: pydra-ants
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deploy-fileformats:
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needs: [devcheck, test]
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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with:
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submodules: recursive
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fetch-depth: 0
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: '3.11'
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- name: Install build tools
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run: python -m pip install build twine
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- name: Build source and wheel distributions
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run: python -m build ./related-packages/fileformats
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- name: Check distributions
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run: twine check ./related-packages/fileformats/dist/*
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- name: Check for PyPI token on tag
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id: deployable
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if: github.event_name == 'release' || github.event_name == 'repository_dispatch'
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env:
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PYPI_API_TOKEN: "${{ secrets.PYPI_FILEFORMATS_API_TOKEN }}"
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run: if [ -n "$PYPI_API_TOKEN" ]; then echo "DEPLOY=true" >> $GITHUB_OUTPUT; fi
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- name: Upload to PyPI
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if: steps.deployable.outputs.DEPLOY
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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user: __token__
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password: ${{ secrets.PYPI_FILEFORMATS_API_TOKEN }}
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packages-dir: ./related-packages/fileformats/dist
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deploy-fileformats-extras:
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needs: [deploy-fileformats]
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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with:
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submodules: recursive
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fetch-depth: 0
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: '3.11'
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- name: Install build tools
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run: python -m pip install build twine
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- name: Build source and wheel distributions
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run: python -m build ./related-packages/fileformats-extras
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- name: Check distributions
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run: twine check ./related-packages/fileformats-extras/dist/*
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- name: Check for PyPI token on tag
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id: deployable
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if: github.event_name == 'release' || github.event_name == 'repository_dispatch'
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env:
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PYPI_API_TOKEN: "${{ secrets.PYPI_FILEFORMATS_EXTRAS_API_TOKEN }}"
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run: if [ -n "$PYPI_API_TOKEN" ]; then echo "DEPLOY=true" >> $GITHUB_OUTPUT; fi
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- name: Upload to PyPI
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if: steps.deployable.outputs.DEPLOY
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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user: __token__
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password: ${{ secrets.PYPI_FILEFORMATS_EXTRAS_API_TOKEN }}
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packages-dir: ./related-packages/fileformats-extras/dist
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deploy:
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needs: [nipype-conv, test, deploy-fileformats, deploy-fileformats-extras]
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needs: [nipype-conv, test]
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runs-on: ubuntu-latest
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steps:
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‎related-packages/conftest.py

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‎related-packages/fileformats-extras/LICENSE

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‎related-packages/fileformats-extras/README.rst

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‎related-packages/fileformats-extras/fileformats/extras/medimage_ants/__init__.py

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‎related-packages/fileformats-extras/pyproject.toml

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‎related-packages/fileformats/LICENSE

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‎related-packages/fileformats/README.rst

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‎related-packages/fileformats/fileformats/medimage_ants/__init__.py

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‎related-packages/fileformats/pyproject.toml

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