[skip ci] touched up readme

tclose · tclose · commit 672d5c2981ab · 2024-03-26T10:36:45.000+11:00
diff --git a/README.md b/README.md
@@ -86,29 +86,29 @@ Before the pydra task interfaces can be generated and installed, the file-format
 corresponding to Freesurfer specific file formats will need to be installed
 
 ```console
-   $ pip install -e ./related-packages/fileformats[dev]
-   $ pip install -e ./related-packages/fileformats-extras[dev]
+pip install -e ./related-packages/fileformats[dev]
+pip install -e ./related-packages/fileformats-extras[dev]
 ```
 
 Next install the requirements for running the auto-conversion script and generate the
 Pydra task interfaces from their Nipype counterparts
 
 ```console
-   $ pip install -r nipype-auto-conv/requirements.txt
+pip install -r nipype-auto-conv/requirements.txt
 ```
 
 The run the conversion script to convert Nipype interfaces to Pydra
 
 ```console
-   $ nipype-auto-conv/generate
+nipype-auto-conv/generate
 ```
 
 Install repo in developer mode from the source directory and install pre-commit to
 ensure consistent code-style and quality.
 
 ```console
-   $ pip install -e .[test,dev]
-   $ pre-commit install
+pip install -e .[test,dev]
+pre-commit install
 ```
 
 ### Auto-conversion phase
@@ -121,13 +121,13 @@ After editing one or more conversion specs the `pydra.tasks.freesurfer.auto` pac
 be regenerated by running
 
 ```console
-   $ nipype-auto-conv/generate
+nipype-auto-conv/generate
 ```
 
 The tests should be run on the auto-generated tasks to see if they are valid
 
 ```console
-   $ pytest pydra/tasks/freesurfer/auto/tests/test_<the-name-of-the-task-you-edited>.py
+pytest pydra/tasks/freesurfer/auto/tests/test_<the-name-of-the-task-you-edited>.py
 ```
 
 If the test passes you should then edit the `pydra/tasks/freesurfer/v*/__init__.py` file
@@ -154,9 +154,9 @@ For file-based data, automatically generated file-system objects will be created
 selected format types, e.g. Nifti, Dicom. Therefore, it is important to specify the
 format of the file using the "mime-like" string corresponding to a
 [fileformats](https://github.com/ArcanaFramework/fileformats) class
-in the ``inputs > types`` and ``outputs > types`` dicts of the YAML spec.
+in the `inputs > types` and `outputs > types` dicts of the YAML spec.
 
-If the required file-type is not found implemented within fileformats, please see the `fileformats
+If the required file-type is not found implemented within fileformats, please see the `fileformats`
 docs [https://arcanaframework.github.io/fileformats/developer.html] for instructions on how to define
 new fileformat types, and see 
 [fileformats-medimage-extras](https://github.com/ArcanaFramework/fileformats-medimage-extras/blob/6c2dabe91e95687eebc2639bb6f034cf9595ecfc/fileformats/extras/medimage/nifti.py#L30-L48)
