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ORCIDOmer S. Alkhnbashi
Person information
- affiliation (PhD 2017): University of Freiburg, Department of Computer Science, Germany
- affiliation: University of Copenhagen, Department of Biology, Denmark
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2020 – today
- 2024
[j8]Omer S. Alkhnbashi
, Rasheed Mohammad, Doaa M. Bamasoud:
Education in Transition: Adapting and Thriving in a Post-COVID World. Syst. 12(10): 402 (2024)- 2022
- [j7]Rick Gelhausen, Teresa Müller, Sarah L. Svensson, Omer S. Alkhnbashi, Cynthia M. Sharma, Florian Eggenhofer, Rolf Backofen:
RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria. Briefings Bioinform. 23(2) (2022) - [j6]Alexander Mitrofanov, Marcus Ziemann, Omer S. Alkhnbashi, Wolfgang R. Hess, Rolf Backofen:
CRISPRtracrRNA: robust approach for CRISPR tracrRNA detection. Bioinform. 38(Supplement_2): ii42-ii48 (2022) - 2021
- [j5]Victor Alexandre Padilha, Omer S. Alkhnbashi, Van Dinh Tran, Shiraz A. Shah, André C. P. L. F. de Carvalho, Rolf Backofen:
Casboundary: automated definition of integral Cas cassettes. Bioinform. 37(10): 1352-1359 (2021) - [j4]Omer S. Alkhnbashi, Alexander Mitrofanov, Robson Bonidia, Martin Raden, Van Dinh Tran, Florian Eggenhofer, Shiraz A. Shah, Ekrem Öztürk, Victor Alexandre Padilha, Danilo Sipoli Sanches, André C. P. L. F. de Carvalho, Rolf Backofen:
CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems. Nucleic Acids Res. 49(Webserver-Issue): 125-130 (2021)
2010 – 2019
- 2018
- [j3]Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen:
Freiburg RNA tools: a central online resource for RNA-focused research and teaching. Nucleic Acids Res. 46(Webserver-Issue): W25-W29 (2018) - 2017
- [b1]Omer S. Alkhnbashi:
Computational characterisation of genomic CRISPR-Cas systems in archaea and bacteria. University of Freiburg, Germany, 2017 - 2016
- [j2]Omer S. Alkhnbashi, Shiraz A. Shah, Roger A. Garrett, Sita J. Saunders, Fabrizio Costa, Rolf Backofen:
Characterizing leader sequences of CRISPR loci. Bioinform. 32(17): 576-585 (2016) - 2014
- [j1]Omer S. Alkhnbashi, Fabrizio Costa, Shiraz A. Shah, Roger A. Garrett, Sita J. Saunders, Rolf Backofen:
CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci. Bioinform. 30(17): 489-496 (2014)
Coauthor Index
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