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2020 – today
- 2024
[i1]Letian Gao, Zhi John Lu:
RNACG: A Universal RNA Sequence Conditional Generation model based on Flow-Matching. CoRR abs/2407.19838 (2024)- 2022
- [j12]Weihao Zhao
, Shang Zhang, Yumin Zhu, Xiaochen Xi, Pengfei Bao, Ziyuan Ma, Thomas H. Kapral, Shuyuan Chen, Bojan Zagrovic, Yu-Cheng T. Yang, Zhi John Lu:
POSTAR3: an updated platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins. Nucleic Acids Res. 50(D1): 287-294 (2022) - 2021
- [j11]Jing Gong, Kui Xu, Ziyuan Ma, Zhi John Lu, Qiangfeng Cliff Zhang:
A deep learning method for recovering missing signals in transcriptome-wide RNA structure profiles from probing experiments. Nat. Mach. Intell. 3(11): 995-1006 (2021) - 2020
- [j10]Kequan Lin, Lu Li, Yifei Dai, Huili Wang, Shuaishuai Teng, Xilinqiqige Bao, Zhi John Lu, Dong Wang:
A comprehensive evaluation of connectivity methods for L1000 data. Briefings Bioinform. 21(6): 2194-2205 (2020)
2010 – 2019
- 2019
- [j9]Shasha Li, Shuaishuai Teng, Junquan Xu, Guannan Su, Yu Zhang, Jianqing Zhao, Suwei Zhang, Haiyan Wang, Wenyan Qin, Zhi John Lu, Yong Guo, Qianyong Zhu, Dong Wang:
Microarray is an efficient tool for circRNA profiling. Briefings Bioinform. 20(4): 1420-1433 (2019) - [j8]Yumin Zhu, Gang Xu, Yu-Cheng T. Yang, Zhiyu Xu, Xinduo Chen, Binbin Shi, Daoxin Xie, Zhi John Lu, Pengyuan Wang:
POSTAR2: deciphering the post-transcriptional regulatory logics. Nucleic Acids Res. 47(Database-Issue): D203-D211 (2019) - 2018
- [j7]Jing Gong, Di Shao, Kui Xu, Zhipeng Lu, Zhi John Lu, Yu-Cheng T. Yang, Qiangfeng Cliff Zhang:
RISE: a database of RNA interactome from sequencing experiments. Nucleic Acids Res. 46(Database-Issue): D194-D201 (2018) - 2017
- [j6]Boqin Hu, Yu-Cheng T. Yang, Yiming Huang, Yumin Zhu, Zhi John Lu:
POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins. Nucleic Acids Res. 45(Database-Issue): D104-D114 (2017) - 2016
- [j5]Xihao Hu, Yang Wu, Zhi John Lu, Kevin Y. Yip:
Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations. Briefings Bioinform. 17(6): 1032-1043 (2016) - [j4]Yang Wu, Rihao Qu, Yiming Huang, Binbin Shi, Mengrong Liu, Yang Li, Zhi John Lu:
RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data. Nucleic Acids Res. 44(Webserver-Issue): W294-W301 (2016) - 2014
- [j3]Xihao Hu, Thomas K. F. Wong, Zhi John Lu, Ting-Fung Chan, Terrence Chi-Kong Lau, Siu-Ming Yiu, Kevin Y. Yip:
Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data. Bioinform. 30(8): 1049-1055 (2014) - 2011
- [j2]Chao Cheng, Koon-Kiu Yan, Woochang Hwang, Jiang Qian, Nitin Bhardwaj, Joel S. Rozowsky, Zhi John Lu, Wei Niu, Pedro Alves, Masaomi Kato, Michael Snyder, Mark Gerstein:
Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data. PLoS Comput. Biol. 7(11) (2011)
2000 – 2009
- 2008
- [j1]Zhi John Lu, David H. Mathews:
OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics. Nucleic Acids Res. 36(Web-Server-Issue): 104-108 (2008)
Coauthor Index
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