Abstract
Five folate-sensitive fragile sites have been identi-fied at the molecular level to date1–8. Each is characterized by an expanded and methylated trinucleotide repeat of CGG (CCG). Of the three X chromosome sites, FRAXA, FRAXE and FRAXF, the former two are associated with mental retar-dation in their expanded forms. FRAXA expansion results in fragile X syndrome due to down regula-tion of expression of the FMR1 gene, which carries the hypermutable CGG repeat in the 5′ untranslated portion of its first exon9,10. Mild mental retardation without ponsistent physical findings has been found associated with expanded CCG repeats at FRAXE11–13. We have identified a large gene (FMR2) transcribed distally from the CpG island at FRAXE, and down-regulated by repeat expansion and methylation. The gene is novel, expressed in adult brain and placenta, and shows similarity with another human protein, MLLT2, expressed from a gene at chromosome 4q21 involved in translocations found in acute lymphoblastic leukaemia (ALL) cells14,15. Identifi-cation of this gene will facilitate further studies to determine the role of its product in FRAXE associated mental deficiency.
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References
Verkerk, A.J.M.H. et al. Identification of a gene (FMR-1) containing a CGQ repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome. Cell. 65, 905–914 (1991).
Kremer, E.J. et al. Mapping of DNA instability at the fragile X to a trinucleotide repeat sequence p(CCG)n. Science. 252, 1711–1714 (1991).
Oberlé, I. et al. Instability of a 550-base pair DNA segment and abnormal methylation in fragile X syndrome. Science. 252, 1097–1102 (1991).
Yu, S. et al. Fragile-X syndrome: unique genetics of the heritable unstable element. Am. J. Hum. Genet. 50, 968–980 (1992).
Knight, S.J.L. et al. Trinucleotide repeat amplification and hypermethylation of a CpG island in FRAXE mental retardation. Cell. 74, 127–134 (1993).
Parrish, J.E. et al. Isolation of a GCC repeat showing expansion in FRAXF, a fragile site distal to FRAXA and FRAXE. Nature Genet. 8, 229–235 (1994).
Jones, C. et al. Physical linkage of the fragile site FRA11B and a Jacobsen syndrome chromosome deletion breakpoint in 11q23.3. Hum. Mol. Genet. 3, 2123–2130 (1994).
Nancarrow, J.K. et al. Molecular basis of p(CCG)n repeat instability at the FRA16A fragile site locus. Hum. Mol. Genet. 4, 367–372 (1995).
Sutcliffe, J.S. et al. DNA methylation represses FMR-1 transcription in fragile X syndrome. Hum. Mol. Genet. 1, 397–400 (1992).
Pieretti, M. et al. Absence of expression of the FMR-1 gene in fragile X syndrome. Cell. 66, 817–822 (1991).
Hamel, B.C.J. et al. Segregation of FRAXE in a large family: Clinical, pyschometric, cytogenetic and molecular data. Am. J. Hum. Genet. 55, 923–931 (1994).
Knight, S.J.L. et al. Triplet repeat expansion at the FRAXE locus and X-linked mild mental handicap. Am. J. Hum. Genet. 55, 81–86 (1994).
Mulley, J.C. et al. FRAXE and mental retardation. J. Med. Genet. 32, 162–169 (1995).
Gu, Y. et al. The t(4;11) chromosome translocation of human acute leukemias fuses the ALL-1 gene, related to drosophila trithorax, to the AF–4 gene. Cell. 71, 701–708 (1992).
Morrissey, J. et al. A serine/proline-rich protein is fused to HRX in t(4;11) acute leukemias. Blood. 81, 1124–1131 (1993).
Buckler, A.J. et al. Exon amplification: a strategy to isolate mammaliangenes based on RNA splicing. Proc. Natl. Acad. Sci. USA 88, 4005–4009 (1991).
Lovett, M., Kere, J. & Hinton, L.M. Direct selection: a method for the isolation of cDNAs encoded by large genomic regions. Proc. Na tl. Acad. Sci. USA 88, 9628–9632 (1991).
Parimoo, S., Patanjali, S.R., Shukla, H., Chaplin, D.D. & Weissman, S.M., cDNA selection: efficient PCR approach for the selection of cDNAs encoded in large chromosomal DNA fragments. Proc. Na tl. Acad. Sci. USA 88, 9623–9627 (1991).
Timms, K.M. et al. 130 kb of DNA sequence reveals two new genes and a regional duplication distal to the human iduronate-2 sulfatase locus. Genome Res. 5, 71–78 (1995).
Uberbacher, E.C. & Mural, R.J. Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach. Proc. Natl. Acad. Sci. USA 88, 11261–11265 (1991).
Land, H., Grez, M., Hauser, H., Lindenmaier, W. & Schutz, G. 5′–terminal sequences of eucaryotic mRNA can be cloned with high efficiency. Nucl. Acids Res. 9, 2251–2266 (1981).
Biondi, A. et al. Detection of ALL-1 /AF4 fusion transcript by reverse transcription-polymerase chain reaction for diagnosis and monitoring of acute leukemias with the t(4;11) translocation. Blood. 82, 2943–2947 (1993).
Eichler, E.E. et al. Evolution of the cryptic FMR1 CGG repeat. Nature Genet. 11, 301–308 (1995).
Sambrook, J., Fritsch, E.S. & Maniatis, T., A Laboratory Manual (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 1989).
Gecz, J., Gedeon, A.K., Sutherland, G.R. & Mulley, J.C. Cloning of FMR2: A gene associated with FRAXE mental retardation. Nature Genet. 13, 105–108 (1996).
Gedeon, A.K. et al. Overlapping submicroscopic deletions in Xq28 in two unrelated boys with developmental disorders: identification of a gene near FRAXE. Am. J. Hum. Genet. 58, 907–914 (1995).
Civitello, A.B., Richards, S. & Gibbs, R.A. A simple protocol for the automation of DNA cycle sequencing reactions and polymerase chain reactions. DNA Seq. 3, 17–23 (1992).
Munroe, D.J. et al. Systematic screening of an arrayed cDNA library by PCR. Proc. Natl. Acad. Sci. USA 92, 2209–2213 (1995).
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Gu, Y., Shen, Y., Gibbs, R. et al. Identification of FMR2, a novel gene associated with the FRAXE CCG repeat and CpG island. Nat Genet 13, 109–113 (1996). https://doi.org/10.1038/ng0596-109
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DOI: https://doi.org/10.1038/ng0596-109
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