Published June 3, 2020
| Version 1.5.0
Software
Open
nipy/nipype: 1.5.0
Creators
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Esteban, Oscar1
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Markiewicz, Christopher J.2
- Burns, Christopher
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Goncalves, Mathias3
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Jarecka, Dorota3
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Ziegler, Erik4
- Berleant, Shoshana
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Ellis, David Gage5
- Pinsard, Basile
- Madison, Cindee
- Waskom, Michael1
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Notter, Michael Philipp6
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Clark, Daniel7
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Manhães-Savio, Alexandre8
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Clark, Dav9
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Jordan, Kesshi10
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Dayan, Michael11
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Halchenko, Yaroslav O.12
- Loney, Fred
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Salo, Taylor13
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Dewey, Blake E14
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Johnson, Hans15
- Bougacha, Salma16
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Keshavan, Anisha17
- Yvernault, Benjamin
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Hamalainen, Carlo
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Ćirić , Rastko2
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Christian, Horea18
- Dubois, Mathieu
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Joseph, Michael19
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Cipollini, Ben20
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Tilley II, Steven21
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Visconti di Oleggio Castello, Matteo22
- Wong, Jason23
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De La Vega, Alejandro24
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Kaczmarzyk, Jakub3
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Huntenburg, Julia M.25
- Clark, Michael G.26
- Benderoff, Erin27
- Erickson, Drew
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Kent, James D.28
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Hanke, Michael29
- Giavasis, Steven30
- Moloney, Brendan
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Nichols, B. Nolan31
- Tungaraza, Rosalia
- Frohlich, Caroline30
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Wassermann, Demian32
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de Hollander, Gilles33
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Eshaghi, Arman34
- Millman, Jarrod
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Nielson, Dylan M.35
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Varoquaux, Gael36
- Watanabe, Aimi
- Mordom, David
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Mancini, Matteo34
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Guillon, Jérémy37
- Koudoro, Serge38
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Chetverikov, Andrey39
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Rokem, Ariel40
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Acland, Benjamin41
- Forbes, Jessica
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Markello, Ross42
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Gillman, Ashley43
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Kong, Xiang-Zhen44
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Geisler, Daniel45
- Salvatore, John
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Gramfort, Alexandre46
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Doll, Anna47
- Buchanan, Colin
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DuPre, Elizabeth42
- Liu, Siqi48
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Schaefer, Alexander49
- Kleesiek, Jens50
- Sikka, Sharad51
- Schwartz, Yannick
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Lee, John A.52
- Mattfeld, Aaron
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Richie-Halford, Adam53
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Liem, Franz54
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Perez-Guevara, Martin Felipe55
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Heinsfeld, Anibal Sólon
- Haselgrove, Christian
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Durnez, Joke56
- Lampe, Leonie57
- Poldrack, Russell
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Glatard, Tristan58
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Tabas, Alejandro59
- Cumba, Chad
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Pérez-García, Fernando34
- Blair, Ross
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Iqbal, Shariq60
- Welch, David15
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Triplett, William1
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Ghayoor, Ali5
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Craddock, R. Cameron30
- Correa, Carlos
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Papadopoulos Orfanos, Dimitri61
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Stadler, Jörg62
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Warner, Joshua63
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Sisk, Lucinda M.64
- Falkiewicz, Marcel
- Sharp, Paul65
- Rothmei, Simon
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Kim, Sin66
- Weinstein, Alejandro
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Kahn, Ari E.67
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Kastman, Erik68
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Bottenhorn, Katherine13
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Grignard, Martin69
- Perkins, L. Nathan70
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Contier, Oliver29
- Zhou, Dale
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Bielievtsov, Dmytro
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Cooper, Gavin71
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Stojic, Hrvoje72
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Linkersdörfer, Janosch73
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Waller, Lea74
- Renfro, Mandy
- Hinds, Oliver
- Stanley, Olivia75
- Küttner, René
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Pauli, Wolfgang M.76
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Glen, Daniel77
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Kimbler, Adam13
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Meyers, Benjamin78
- Tarbert, Claire
- Ginsburg, Daniel
- Haehn, Daniel
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Margulies, Daniel S.79
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Ma, Feilong22
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Malone, Ian B.34
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Snoek, Lukas80
- Brett, Matthew
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Cieslak, Matthew81
- Hallquist, Michael
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Molina-Romero, Miguel82
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Bilgel, Murat83
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Lee, Nat
- Inati, Souheil
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Gerhard, Stephan84
- Mathotaarachchi, Sulantha85
- Saase, Victor
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Van, Andrew41
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Steele, Christopher John86
- Ort, Eduard87
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Condamine, Eric88
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Lerma-Usabiaga, Garikoitz2
- Schwabacher, Isaac
- Arias, Jaime
- Lai, Jeff
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Pellman, John89
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Huguet, Jordi90
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Junhao WEN67
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Leinweber, Katrin91
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Chawla, Kshitij92
- Weninger, Leon93
- Modat, Marc
- Harms, Robbert
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Andberg, Sami Kristian94
- Baratz, Zvi95
- Matsubara, K
- González Orozco, Abel A.96
- Marina, Ana
- Davison, Andrew
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Floren, Andrew97
- Park, Anne
- Cheung, Brian
- McDermottroe, Conor
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McNamee, Daniel98
- Shachnev, Dmitry
- Flandin, Guillaume
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Gonzalez, Ivan99
- Varada, Jan
- Schlamp, Kai
- Podranski, Kornelius
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Huang, Lijie100
- Noel, Maxime
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Crusoe, Michael R.
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Pannetier, Nicolas101
- Khanuja, Ranjeet
- Urchs, Sebastian
- Nickson, Thomas
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Huang, Lijie100
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Broderick, William60
- Tambini, Arielle
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Mihai, Paul Glad59
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Gorgolewski, Krzysztof J.1
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Ghosh, Satrajit102
- 1. Department of Psychology, Stanford University
- 2. Stanford University
- 3. MIT
- 4. Independent
- 5. The University of Iowa
- 6. The Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland
- 7. Developer
- 8. Klinikum rechts der Isar, TUM. ACPySS
- 9. UC Berkeley
- 10. University of California, San Francisco
- 11. Mayo Clinic, Neurology, Rochester, MN, USA
- 12. Dartmouth College: Hanover, NH, United States
- 13. Florida International University
- 14. Department of Electrical and Computer Engineering, Johns Hopkins University
- 15. University of Iowa
- 16. Molecular Imaging Research Center, CEA, France
- 17. UC Berkeley - UCSF Graduate Program in Bioengineering
- 18. Institute for Biomedical Engineering, ETH and University of Zurich
- 19. The Centre for Addiction and Mental Health
- 20. UC San Diego
- 21. Holland Bloorview Kids Rehabilitation Hospital
- 22. Dartmouth College
- 23. Shattuck Lab, UCLA Brain Mapping Center
- 24. University of Texas at Austin
- 25. Research Group Neuroanatomy and Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- 26. National Institutes of Health
- 27. Concordia University
- 28. Neuroscience Program, University of Iowa
- 29. Otto-von-Guericke-University Magdeburg, Germany
- 30. Child Mind Institute
- 31. SRI International
- 32. Athena EPI, Inria Sophia-Antipolis
- 33. Vrije Universiteit, Amsterdam
- 34. University College London
- 35. National Institute of Mental Health
- 36. INRIA
- 37. ARAMIS LAB, Brain and Spine Institute (ICM), Paris, France.
- 38. Indiana University, IN, USA
- 39. Donders Institute for Brain, Cognition and Behavior, Center for Cognitive Neuroimaging
- 40. The University of Washington eScience Institute
- 41. Washington University in St Louis
- 42. Montreal Neurological Institute and Hospital
- 43. Australian eHealth Research Centre, Commonwealth Scientific and Industrial Research Organisation; University of Queensland
- 44. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
- 45. Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany
- 46. CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
- 47. Department of Psychology, University of Bielefeld, Bielefeld, Germany.
- 48. The University of Sydney
- 49. National University Singapore
- 50. UniversityHospital Heidelberg, Germany
- 51. Nathan s Kline institute for psychiatric research
- 52. NIMH IRP
- 53. University of Washington
- 54. University of Zurich
- 55. Neurospin/Unicog/Inserm/CEA
- 56. Department of Psychology, Stanford University; Parietal, INRIA
- 57. MPI CBS Leipzig, Germany
- 58. 1 McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University, Montréal, 3801 University Street, WB-208, H3A 2B4, Québec, Canada. 2 University of Lyon, CNRS, INSERM, CREATIS., Villeurbanne, 7, avenue Jean Capelle, 69621, France.
- 59. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.
- 60. Duke University
- 61. CEA
- 62. Leibniz Institute for Neurobiology
- 63. Mayo Clinic
- 64. Yale University; New Haven, CT, United States
- 65. University of Illinois Urbana Champaign
- 66. Korea Advanced Institute of Science and Technology
- 67. University of Pennsylvania
- 68. Harvard University - Psychology
- 69. GIGA Institute
- 70. Boston University
- 71. University of Newcastle, Australia
- 72. Max Planck UCL Centre for Computational Psychiatry and Ageing Research, University College London
- 73. German Institute for International Educational Research
- 74. Charite Universitatsmedizin Berlin, Germany
- 75. Dept of Medical Biophysics, Univeristy of Western Ontario
- 76. California Institute of Technology
- 77. NIMH, Scientific and Statistical Computing Core
- 78. University of Pittsburgh
- 79. Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- 80. University of Amsterdam
- 81. Department of Neuropsychiatry, University of Pennsylvania
- 82. Technical University Munich
- 83. National Institute on Aging, Baltimore, MD, USA
- 84. Institute of Neuroinformatics, ETH/University of Zurich
- 85. Enigma Biomedical Group
- 86. MPI-CBS; McGill University
- 87. Vrije Universiteit Amsterdam
- 88. CNRS, UMS3552 IRMaGe
- 89. Child Mind Institute / Nathan Kline Institute
- 90. BarcelonaBeta Brain Research Center
- 91. TIB – Leibniz Information Centre for Science and Technology and University Library, Hannover, Germany
- 92. INRIA-Saclay, Team Parietal
- 93. Institute of Imaging & Computer Vision, RWTH Aachen University, Germany
- 94. University of Helsinki
- 95. Sagol School of Neuroscience, Tel Aviv University
- 96. Universidad de Guadalajara
- 97. The University of Texas at Austin
- 98. University of Cambridge
- 99. Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
- 100. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China
- 101. Medical Imaging & Biomarkers, Bioclinica, Newark, CA, USA.
- 102. MIT, HMS
Description
1.5.0 (June 03, 2020)
New feature release in the 1.5.x series.
In this release, the example scripts have been split out into their own package: niflow-nipype1-examples.
- FIX: volterra_expansion_order documentation error (https://github.com/nipy/nipype/pull/3213)
- FIX: BET incorrect output paths (https://github.com/nipy/nipype/pull/3214)
- FIX: Terminal output in
report.rst
spreads one line per character (https://github.com/nipy/nipype/pull/3220) - FIX: Allow parsing freesurfer 7 version string (https://github.com/nipy/nipype/pull/3216)
- FIX: Use PackageInfo to get NiftyReg version (https://github.com/nipy/nipype/pull/3194)
- FIX: Partial rollback of N4BiasFieldCorrection (https://github.com/nipy/nipype/pull/3188)
- FIX: ANTs' tools maintenance overhaul (https://github.com/nipy/nipype/pull/3180)
- FIX: load_resultfile crashes if open resultsfile from crashed job (https://github.com/nipy/nipype/pull/3182)
- FIX: FSL model.py make multiple F-tests (https://github.com/nipy/nipype/pull/3166)
- ENH: Restore ants.legacy interfaces (https://github.com/nipy/nipype/pull/3222)
- ENH: Add
"TruncateImageIntensity"
operation toants.utils.Image.Math
(https://github.com/nipy/nipype/pull/3210) - ENH: SPM NewSegment multi-channel segmentation (https://github.com/nipy/nipype/pull/3162)
- ENH: Add reverse-ordered transform lists to ants.Registration outputs (https://github.com/nipy/nipype/pull/3192)
- ENH: Improve workflow connect performance (https://github.com/nipy/nipype/pull/3184)
- ENH: Add
ConstrainedSphericalDeconvolution
interface to replaceEstimateFOD
for MRtrix3'sdwi2fod
(https://github.com/nipy/nipype/pull/3176) - ENH: Detect values for EulerNumber interface (https://github.com/nipy/nipype/pull/3173)
- ENH: Remove examples from repository (https://github.com/nipy/nipype/pull/3172)
- TEST: Clean up tests (https://github.com/nipy/nipype/pull/3195)
- TEST: Mock terminal output before testing changing default value (https://github.com/nipy/nipype/pull/3193)
- REF: make invocations of python and pytest consistent with the one used/desired python (https://github.com/nipy/nipype/pull/3208)
- REF: Prefer math.gcd to hand-rolled Euclid's algorithm (https://github.com/nipy/nipype/pull/3177)
- REF: Removed all uses of numpy_mmap (https://github.com/nipy/nipype/pull/3121)
- DOC: Sphinx 3 compatibility (https://github.com/nipy/nipype/pull/3206)
- DOC: Update links, typos in contributing guide (https://github.com/nipy/nipype/pull/3160)
- DOC: Update SelectFiles docstring to match actual behavior (https://github.com/nipy/nipype/pull/3041)
- DOC: Updated .zenodo.json file (https://github.com/nipy/nipype/pull/3167)
- DOC: Update .zenodo.json (https://github.com/nipy/nipype/pull/3165)
- MNT: Permit recent nilearns (https://github.com/nipy/nipype/pull/2841)
- MNT: Test Python 3.8 (https://github.com/nipy/nipype/pull/3154)
- MNT: Restore ReadTheDocs (https://github.com/nipy/nipype/pull/3207)
- MNT: Update Zenodo ordering based on commit count (https://github.com/nipy/nipype/pull/3169)
Files
nipy/nipype-1.5.0.zip
Files
(3.6 MB)
Name | Size | Download all |
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md5:22a5f55f285a415995447be795809cdc
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3.6 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/nipy/nipype/tree/1.5.0 (URL)