FastQCFastQC Report
Wed 8 May 2024
EGAF00001420995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001420995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2621291
Total Bases262.1 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT58000.22126501788622474No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT49990.19070755593331684No Hit
CTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGT29440.1123110711477665No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)