FastQCFastQC Report
Wed 8 May 2024
EGAF00001421053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001421053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3812945
Total Bases381.2 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT141290.3705534698245057No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT113320.2971980975335338No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT58970.1546573580264074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)