FastQCFastQC Report
Fri 31 May 2024
EGAF00002300353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8357787
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT221950.265560727977394No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT86590.10360398033594298No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA84770.10142637040163863No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)