FastQCFastQC Report
Fri 31 May 2024
EGAF00002300651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5344739
Total Bases673.4 Mbp
Sequences flagged as poor quality0
Sequence length126
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT139980.26190240533728587No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG56880.10642240902689541No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)