FastQCFastQC Report
Tue 7 May 2024
EGAF00002869301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002869301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14454
Total Bases2.2 Mbp
Sequences flagged as poor quality0
Sequence length154
%GC69

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCCG1211083.78303583783035No Hit
CGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCCG3152.179327521793275No Hit
AGCTGCCTGACCCGCACGGTATTGGCAGTGGAGGCAGCCGCAAAGACCAA2831.957935519579355No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1080.7471980074719801No Hit
AGCTGCCTGACCCGCACGCAGTGGAGGCAGCCGCAAAGACCAAGTCTCTG890.6157465061574651No Hit
AGCTGCCTGACCCGCACGCCCAGGGCACCCTCTCTCCGCCCCCAGGCCCG450.311332503113325No Hit
AGCTGCCTGACCCGCACGCCCAGGGCCACCTCTCTCCGCCCCCAGGCCCG440.30441400304414No Hit
AGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCAAGGCCCG320.22139200221392No Hit
AGCTGCCTGACCCGCACGCCAAGGGCCCCCTCTCTCCGCCCCCAGGCCCG320.22139200221392No Hit
GCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCCGC310.214473502144735No Hit
AGCTGCCTGACCCGCACGGTGGTGAGGTGGTCTCAGGGTGACGGCCATCT300.20755500207555005No Hit
AGCTGCCTGACCCGCACGGTCACGTAATGGCAGGCCCCTGGGGAGCCTTG280.19371800193718No Hit
AGCTGCCTGACCCGCACGGCCACCGGCCCCACCTGCAGCTGCTCCGCGGA280.19371800193718No Hit
AGCTGCCTGACCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCCGC270.18679950186799502No Hit
AGCTGCCTGACCCGCACGCCCAGGGACCCCTCTCTCCGCCCCCAGGCCCG240.16604400166044No Hit
GGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCCG240.16604400166044No Hit
AGCTGCCTGACCCGCACGGCACGAGAACCGCCCATGCCTGGCAGTGGAGG220.15220700152207No Hit
AGCTGCCTGACCCGCACGCCCAGGACCCCCTCTCTCCGCCCCCAGGCCCG200.1383700013837No Hit
AGCTGCCTGACCCGCACGCCCGGGGCCCCCTCTCTCCGCCCCCAGGCCCG190.13145150131451502No Hit
AGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCTG170.11761450117614501No Hit
AGCTGCCTGACCCGCACGCCCAGGGCCCCCTCCCTCCGCCCCCAGGCCCG160.11069600110696No Hit
AGCTGCCTGACCCGCACGGAGCAGTGGAGGCAGCCGCAAAGACCAAGTCT160.11069600110696No Hit
AGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCAGGCCCGC160.11069600110696No Hit
AGCTGCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCCGC150.10377750103777503No Hit
AGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCGGGCCCG150.10377750103777503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)