FastQCFastQC Report
Sat 4 May 2024
EGAF00004177075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004177075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511300447
Total Bases77.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTGTGGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT26669290.5215972361549687No Hit
ATTTGTGGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA17967050.35139906693646994No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATCTC16237300.31756866428086655Illumina Single End Sequencing Primer (100% over 31bp)
ATTTGTGGTATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC10284740.20114866044699548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)