FastQCFastQC Report
Sun 12 May 2024
EGAF00005744142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68468791
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length25-51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA812300.11863799376857699No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA775420.11325159808941274No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC762820.11141134360032734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)