FastQCFastQC Report
Thu 9 May 2024
EGAF00005744411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55959967
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length34-51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2484320.4439459372804848No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG1002410.1791298411594846No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC951900.1701037457724019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)