FastQCFastQC Report
Sun 5 May 2024
EGAF00006068010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006068010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496769842
Total Bases75 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCCCTGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18310030.36858175460659304No Hit
CCTGCCCCTGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13376190.26926332617429705No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCC5240040.10548224865872594TruSeq Adapter, Index 5 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)