FastQCFastQC Report
Sun 5 May 2024
EGAF00006205537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14171936
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTCCAATATCTCGTATG318690.22487400451145137TruSeq Adapter, Index 21 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTCCAATATCTCGTAT262820.18545102094731447TruSeq Adapter, Index 21 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)