FastQCFastQC Report
Fri 10 May 2024
EGAF00008072740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008072740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7070098
Total Bases530.2 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC593350.8392387205948206No Hit
AGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGC388340.5492710284921086No Hit
GCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCC295990.418650491124734No Hit
GGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGC278180.3934598926351516No Hit
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC160560.22709727644510727No Hit
CAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGA152450.21562643120364103No Hit
CAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATG137100.19391527529038494No Hit
CCAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCG118190.16716882849431505No Hit
CCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGAC102350.14476461288089643No Hit
GGGGACCTGACCCAGCCGCAGCCTTTGTGAACCAACACCTGTGCGGCTCA94040.13301088612915973No Hit
GAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGC90840.12848478196483273No Hit
AAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCTTCTACACACCCAAG86740.12268571100428877No Hit
CTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCT82990.11738168268671807No Hit
GACCCAGCCGCAGCCTTTGTGAACCAACACCTGTGCGGCTCACACCTGGT82650.11690078411925832No Hit
AGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCCC82440.11660375853347435No Hit
GGGGAACGAGGCTTCTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGA72450.102473827095466No Hit
ACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCAT72350.10233238634033079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)