FastQCFastQC Report
Wed 8 May 2024
EGAF00008072797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008072797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7650272
Total Bases573.7 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGT139070.18178438622835894No Hit
GTAGAAGAAGCCTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGGT138600.18117002898720463No Hit
GCCACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTG122630.16029495421862125No Hit
GGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGGGGGGCTGC113960.14896202383392382No Hit
GGGCTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCTCCACCTGCCCCA99570.1301522351100719No Hit
CCACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGC96430.12604780588193465No Hit
CCGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCACAGGTGTTG92220.12054473357287167No Hit
CTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCACCAGGGC88280.11539458989170581No Hit
CACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCA85720.11204830364201429No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)