FastQCFastQC Report
Wed 8 May 2024
EGAF00008072836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008072836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10508575
Total Bases788.1 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC1061921.0105271171400498No Hit
AGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGC1032550.9825785132617886No Hit
GCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCC451280.42943976704738746No Hit
GGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGC317130.3017821160338105No Hit
CCAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCG283600.26987484030898573No Hit
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC214140.20377643971708817No Hit
AAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCC155580.14805052064623414No Hit
CAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCGG151400.14407281672348535No Hit
TGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCT136630.13001762846056672No Hit
CAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATG135860.1292848935274288No Hit
CCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGAC135610.12904699257511126No Hit
TGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCT132840.12641105002343325No Hit
GAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATG130820.12448881032870775No Hit
CTTTGTGAACCAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTCTACC116680.11103313246562925No Hit
AGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCCC116150.11052878244671614No Hit
GCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCCCT115510.1099197560087833No Hit
CTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCT113610.10811170877117023No Hit
GAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGC111620.10621801719072281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)