FastQCFastQC Report
Sat 11 May 2024
EGAF00008072962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008072962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17993740
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGC1209650.6722615754145609No Hit
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC1021600.5677530074348079No Hit
GCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCC592360.32920337850830345No Hit
GGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGC435670.2421230939204412No Hit
GAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGC396380.22028772228563934No Hit
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC296730.164907351112109No Hit
GAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATG278730.1549038721244166No Hit
AGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCC233910.12999520944506254No Hit
GGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCT197590.10981041184322993No Hit
AAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCC188950.10500874192913759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)