FastQCFastQC Report
Sat 11 May 2024
EGAF00008073022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008073022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21048048
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC578500.27484733976281317No Hit
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC254780.12104685432112279No Hit
CACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCA245030.11641459578579448No Hit
GAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATG214260.10179566295173785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)