FastQCFastQC Report
Sat 11 May 2024
EGAF00008073027

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008073027
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22133156
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC1295370.5852622192695881No Hit
CTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTG640810.28952491004897807No Hit
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC614520.27764680283281784No Hit
CACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCA554520.2505381519020604No Hit
GCTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGT530030.2394733042138229No Hit
GAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATG455350.20573207002200683No Hit
GCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCC426060.19249853025930871No Hit
ATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTG398290.17995174298685646No Hit
CAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATG346030.1563401080261667No Hit
TGCTGGTTCAAGGGCTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGG335160.15142892409921116No Hit
CTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGTGGGGCTGCCTG334590.15117139191536896No Hit
GCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCCCT332940.15042590401477313No Hit
CTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCTCCACCTGCCCCACCT332470.15021355291581553No Hit
CTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGGGGGGCTGCCTG332000.15000120181685792No Hit
CGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCACC318120.14373006723487602No Hit
CAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGA294700.1331486571549037No Hit
AAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCC290740.1313594861934737No Hit
CCACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGC280920.12692270365780642No Hit
TGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCT261110.11797233074216801No Hit
CTCCAGCTGGTAGAGGGAGCAGATGCTGGTACAGCATTGTTCCACAATGC257960.11654912656830323No Hit
TCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCCTGTGG233560.10552494185646186No Hit
CCCAGCTCCACCTGCCCCACCTGCAGGTCCTCTGCCTCCCGGCGGGTCTT232160.10489240666807752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)