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trailing whitespace deleted by editor
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2 files changed

+225
-225
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wfdb/downloads.py

Lines changed: 32 additions & 32 deletions
Original file line numberDiff line numberDiff line change
@@ -4,31 +4,31 @@
44
import sys
55
import requests
66
from IPython.display import display
7-
7+
88
# Read a header file from physiobank
99
def streamheader(recordname, pbdir):
1010

1111
# Full url of header location
1212
url = os.path.join(dbindexurl, pbdir, recordname+'.hea')
1313
r = requests.get(url)
14-
14+
1515
# Raise HTTPError if invalid url
1616
r.raise_for_status()
17-
17+
1818
# Get each line as a string
1919
filelines = r.content.decode('ascii').splitlines()
20-
20+
2121
# Separate content into header and comment lines
2222
headerlines = []
2323
commentlines = []
24-
24+
2525
for line in filelines:
2626
line = line.strip()
2727
# Comment line
2828
if line.startswith('#'):
2929
commentlines.append(line)
3030
# Non-empty non-comment line = header line.
31-
elif line:
31+
elif line:
3232
# Look for a comment in the line
3333
ci = line.find('#')
3434
if ci > 0:
@@ -37,25 +37,25 @@ def streamheader(recordname, pbdir):
3737
commentlines.append(line[ci:])
3838
else:
3939
headerlines.append(line)
40-
41-
return (headerlines, commentlines)
40+
41+
return (headerlines, commentlines)
4242

4343
# Read certain bytes from a dat file from physiobank
4444
def streamdat(filename, pbdir, fmt, bytecount, startbyte, datatypes):
45-
45+
4646
# Full url of dat file
4747
url = os.path.join(dbindexurl, pbdir, filename)
4848

4949
# Specify the byte range
50-
endbyte = startbyte + bytecount-1
51-
headers = {"Range": "bytes="+str(startbyte)+"-"+str(endbyte), 'Accept-Encoding': '*/*'}
52-
50+
endbyte = startbyte + bytecount-1
51+
headers = {"Range": "bytes="+str(startbyte)+"-"+str(endbyte), 'Accept-Encoding': '*/*'}
52+
5353
# Get the content
5454
r = requests.get(url, headers=headers, stream=True)
55-
55+
5656
# Raise HTTPError if invalid url
5757
r.raise_for_status()
58-
58+
5959
sigbytes = r.content
6060

6161
# Convert to numpy array
@@ -78,7 +78,7 @@ def streamannotation(filename, pbdir):
7878
r = requests.get(url)
7979
# Raise HTTPError if invalid url
8080
r.raise_for_status()
81-
81+
8282
annbytes = r.content
8383

8484
# Convert to numpy array
@@ -90,7 +90,7 @@ def streamannotation(filename, pbdir):
9090

9191
def getdblist():
9292
"""Return a list of all the physiobank databases available.
93-
93+
9494
Usage:
9595
dblist = getdblist()
9696
"""
@@ -122,7 +122,7 @@ def getrecordlist(dburl, records):
122122
return recordlist
123123

124124
def getannotators(dburl, annotators):
125-
125+
126126
if annotators is not None:
127127
# Check for an ANNOTATORS file
128128
r = requests.get(os.path.join(dburl, 'ANNOTATORS'))
@@ -143,7 +143,7 @@ def getannotators(dburl, annotators):
143143
# In case they didn't input a list
144144
if type(annotators) == str:
145145
annotators = [annotators]
146-
# user input ones. Check validity.
146+
# user input ones. Check validity.
147147
for a in annotators:
148148
if a not in annlist:
149149
sys.exit('The database contains no annotators with extension: ', a)
@@ -176,24 +176,24 @@ def dlpbfile(inputs):
176176

177177
# Full url of file
178178
url = os.path.join(dbindexurl, pbdb, subdir, basefile)
179-
179+
180180
# Get the request header
181181
rh = requests.head(url, headers={'Accept-Encoding': 'identity'})
182182
# Raise HTTPError if invalid url
183183
rh.raise_for_status()
184184

185185
# Supposed size of the file
186186
onlinefilesize = int(rh.headers['content-length'])
187-
187+
188188
# Figure out where the file should be locally
189189
if keepsubdirs:
190190
dldir = os.path.join(dlbasedir, subdir)
191191
else:
192192
dldir = dlbasedir
193-
193+
194194
localfile = os.path.join(dldir, basefile)
195-
196-
# The file exists locally.
195+
196+
# The file exists locally.
197197
if os.path.isfile(localfile):
198198
# Redownload regardless
199199
if overwrite:
@@ -204,33 +204,33 @@ def dlpbfile(inputs):
204204
# Local file is smaller than it should be. Append it.
205205
if localfilesize < onlinefilesize:
206206
print('Detected partially downloaded file: '+localfile+' Appending file...')
207-
headers = {"Range": "bytes="+str(localfilesize)+"-", 'Accept-Encoding': '*/*'}
207+
headers = {"Range": "bytes="+str(localfilesize)+"-", 'Accept-Encoding': '*/*'}
208208
r = requests.get(url, headers=headers, stream=True)
209209
print('headers: ', headers)
210210
print('r content length: ', len(r.content))
211211
with open(localfile, "ba") as writefile:
212212
writefile.write(r.content)
213213
print('Done appending.')
214-
# Local file is larger than it should be. Redownload.
214+
# Local file is larger than it should be. Redownload.
215215
elif localfilesize > onlinefilesize:
216216
dlfullfile(url, localfile)
217-
# If they're the same size, do nothing.
218-
219-
# The file doesn't exist. Download it.
217+
# If they're the same size, do nothing.
218+
219+
# The file doesn't exist. Download it.
220220
else:
221221
dlfullfile(url, localfile)
222-
222+
223223
return
224224

225-
# Download a file. No checks.
225+
# Download a file. No checks.
226226
def dlfullfile(url, localfile):
227227
r = requests.get(url)
228228
with open(localfile, "wb") as writefile:
229229
writefile.write(r.content)
230-
230+
231231
return
232232

233233

234234

235235

236-
dbindexurl = 'http://physionet.org/physiobank/database/'
236+
dbindexurl = 'http://physionet.org/physiobank/database/'

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