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Commits on Apr 22, 2019

• Added sh script for kallisto pipeline starting with fq files

  wangz10

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Commits on Jun 19, 2018

• Added scatter_plot function

  wangz10

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  9df9289

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Commits on Jun 14, 2018

• Syntax fix

  wangz10

  committed
  955f8aa

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Commits on Jun 13, 2018

• Added kallisto pipeline

  wangz10

  committed
  462e283

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• Added options for skiping QC and N_CPUS; Updated README

  wangz10

  committed
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Commits on Jun 6, 2018

• Merge pull request #5 from brettvanderwerff/004-dockerfile_missing_wget_subread

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  wangz10

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Commits on May 29, 2018

• added RUN wget subread command

  brettvanderwerff

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  518ed63

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Commits on Jun 7, 2017

• Made plot functions return the fig object for saving

  wangz10

  committed
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Commits on Mar 28, 2017

• Added more plotting functions

  wangz10

  committed
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Commits on Sep 19, 2016

• Not sort BAM in analyze_fastq.sh

  wangz10

  committed
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Commits on Aug 5, 2016

• Added publication

  wangz10

  committed
  a80207d

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• Wrapped single- and paired- end in if block

  wangz10

  committed
  8dbd40c

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Commits on Jun 28, 2016

• Fixed rpkm calculations; added suffixes in FileLinks

  wangz10

  committed
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Commits on Jun 27, 2016

• Do not sort BAM files.

  wangz10

  committed
  d94e7b8

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Commits on Jun 24, 2016

• Updated texts with links, DOI, and etc.; Updated Docker instructions with volumes.

  wangz10

  committed
  2c4a77b

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Commits on Jun 23, 2016

• Added Zenodo DOI badge.

  wangz10

  committed
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• Added environmental variables at the top of the notebook.

  wangz10

  committed
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Commits on Jun 22, 2016

• Fixed bug in bash cmd line args; updated notebook with args

  wangz10

  committed
  65a92de

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• Added command line args for sh and R scripts

  wangz10

  committed
  35f4784

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Commits on Jun 21, 2016

• Updated texts in README and notebook

  wangz10

  committed
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Commits on Jun 20, 2016

• Updated live notebook link

  wangz10

  committed
  6124e22

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• Run nb server on /zika

  wangz10

  committed
  5c921d8

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• Added README for dockerhub page

  wangz10

  committed
  cc55e6a

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• Changed to multi-line apt-get in Dockerfile

  wangz10

  committed
  235fc2a

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Commits on Jun 15, 2016

• Updated .dockerignore

  wangz10

  committed
  79213a7

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• Update README.md

  wangz10

  authored
  1e48acf

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• Update README.md

  wangz10

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  a56a415

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• Updated requirements and notebook

  wangz10

  committed
  d712d41

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• Added deployment instructions in README

  wangz10

  committed
  a86c70f

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• Adding detection of CPUs

  wangz10

  committed
  8e23cf9

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• Dockerized all requirements

  wangz10

  committed
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Commits on Jun 13, 2016

• Run .sh and .R scripts from the notebook

  wangz10

  committed
  3a4edb4

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• Added FastQC in the pipeline

  wangz10

  committed
  b8835a2

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Commits on Jun 10, 2016

• Updated functions using new Enrichr APIs

  wangz10

  committed
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Commits on May 5, 2016

• texts -> text

  wangz10

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