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small changes in basic_gunction and basic_joinnodes
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‎notebooks/basic_function_nodes.ipynb

Lines changed: 24 additions & 26 deletions
Original file line numberDiff line numberDiff line change
@@ -80,14 +80,12 @@
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"170301-21:55:47,598 workflow INFO:\n",
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"\t Executing node rndArray_node in dir: /tmp/tmpv4BGTx/rndArray_node\n",
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"170301-21:55:47,633 workflow INFO:\n",
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"\t Runtime memory and threads stats unavailable\n",
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"170715-22:37:24,267 workflow INFO:\n",
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"\t Executing node rndArray_node in dir: /tmp/tmp4uytvbmi/rndArray_node\n",
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"\n",
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"random_array = [[ 0.55392783 0.56238157 0.26244335]\n",
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" [ 0.25663815 0.20904142 0.5810782 ]\n",
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" [ 0.18068192 0.65697574 0.1218128 ]]\n",
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"random_array = [[ 0.79823248 0.73751608 0.47766192]\n",
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" [ 0.59740982 0.50278375 0.10288339]\n",
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" [ 0.63198252 0.05691885 0.08036156]]\n",
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"\n"
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]
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}
@@ -116,7 +114,7 @@
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"rndArray.run()\n",
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"\n",
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"# Print output\n",
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"print rndArray.result.outputs"
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"print(rndArray.result.outputs)"
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]
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},
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{
@@ -142,26 +140,26 @@
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"170301-21:55:47,697 workflow INFO:\n",
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"\t Executing node rndArray_node in dir: /tmp/tmpFBMKdD/rndArray_node\n"
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"170715-22:37:24,327 workflow INFO:\n",
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"\t Executing node rndArray_node in dir: /tmp/tmpbvuq4v43/rndArray_node\n"
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]
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},
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{
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"ename": "NameError",
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"evalue": "global name 'random' is not defined\nInterface Function failed to run. ",
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"evalue": "name 'random' is not defined\nInterface Function failed to run. ",
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"output_type": "error",
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"traceback": [
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"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
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"\u001b[0;31mNameError\u001b[0m Traceback (most recent call last)",
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"\u001b[0;32m<ipython-input-3-738ed8b85d1d>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m()\u001b[0m\n\u001b[1;32m 20\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 21\u001b[0m \u001b[0;31m# Run node\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 22\u001b[0;31m \u001b[0mrndArray\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mrun\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 23\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 24\u001b[0m \u001b[0;31m# Print output\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
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"\u001b[0;32m/opt/conda/envs/python2/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.pyc\u001b[0m in \u001b[0;36mrun\u001b[0;34m(self, updatehash)\u001b[0m\n\u001b[1;32m 392\u001b[0m self.inputs.get_traitsfree())\n\u001b[1;32m 393\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 394\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_run_interface\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 395\u001b[0m \u001b[0;32mexcept\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 396\u001b[0m \u001b[0mos\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mremove\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mhashfile_unfinished\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
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"\u001b[0;32m/opt/conda/envs/python2/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.pyc\u001b[0m in \u001b[0;36m_run_interface\u001b[0;34m(self, execute, updatehash)\u001b[0m\n\u001b[1;32m 502\u001b[0m \u001b[0mold_cwd\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mos\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mgetcwd\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 503\u001b[0m \u001b[0mos\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mchdir\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0moutput_dir\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 504\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_result\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_run_command\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mexecute\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 505\u001b[0m \u001b[0mos\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mchdir\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mold_cwd\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 506\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n",
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"\u001b[0;32m/opt/conda/envs/python2/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.pyc\u001b[0m in \u001b[0;36m_run_command\u001b[0;34m(self, execute, copyfiles)\u001b[0m\n\u001b[1;32m 628\u001b[0m \u001b[0mlogger\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0minfo\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'Running: %s'\u001b[0m \u001b[0;34m%\u001b[0m \u001b[0mcmd\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 629\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 630\u001b[0;31m \u001b[0mresult\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_interface\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mrun\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 631\u001b[0m \u001b[0;32mexcept\u001b[0m \u001b[0mException\u001b[0m \u001b[0;32mas\u001b[0m \u001b[0mmsg\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 632\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_result\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mruntime\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mstderr\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mmsg\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
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"\u001b[0;32m/opt/conda/envs/python2/lib/python2.7/site-packages/nipype/interfaces/base.pyc\u001b[0m in \u001b[0;36mrun\u001b[0;34m(self, **inputs)\u001b[0m\n\u001b[1;32m 1041\u001b[0m version=self.version)\n\u001b[1;32m 1042\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1043\u001b[0;31m \u001b[0mruntime\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_run_wrapper\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mruntime\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1044\u001b[0m \u001b[0moutputs\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0maggregate_outputs\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mruntime\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1045\u001b[0m \u001b[0mruntime\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mendTime\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mdt\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0misoformat\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdt\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mutcnow\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
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"\u001b[0;32m/opt/conda/envs/python2/lib/python2.7/site-packages/nipype/interfaces/base.pyc\u001b[0m in \u001b[0;36m_run_wrapper\u001b[0;34m(self, runtime)\u001b[0m\n\u001b[1;32m 998\u001b[0m \u001b[0mruntime\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0menviron\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m'DISPLAY'\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;34m':%d'\u001b[0m \u001b[0;34m%\u001b[0m \u001b[0mvdisp_num\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 999\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1000\u001b[0;31m \u001b[0mruntime\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_run_interface\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mruntime\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1001\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1002\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_redirect_x\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
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"\u001b[0;32m/opt/conda/envs/python2/lib/python2.7/site-packages/nipype/interfaces/utility.pyc\u001b[0m in \u001b[0;36m_run_interface\u001b[0;34m(self, runtime)\u001b[0m\n\u001b[1;32m 497\u001b[0m \u001b[0msetattr\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mruntime\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m'runtime_threads'\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mnum_threads\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 498\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 499\u001b[0;31m \u001b[0mout\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mfunction_handle\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m**\u001b[0m\u001b[0margs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 500\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 501\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mlen\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_output_names\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;34m==\u001b[0m \u001b[0;36m1\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
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"\u001b[0;32m<ipython-input-3-96943c3aa6f2>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m()\u001b[0m\n\u001b[1;32m 20\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 21\u001b[0m \u001b[0;31m# Run node\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 22\u001b[0;31m \u001b[0mrndArray\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mrun\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 23\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 24\u001b[0m \u001b[0;31m# Print output\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
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"\u001b[0;32m/opt/conda/lib/python3.5/site-packages/nipype/pipeline/engine/nodes.py\u001b[0m in \u001b[0;36mrun\u001b[0;34m(self, updatehash)\u001b[0m\n\u001b[1;32m 370\u001b[0m self.inputs.get_traitsfree())\n\u001b[1;32m 371\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 372\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_run_interface\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 373\u001b[0m \u001b[0;32mexcept\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 374\u001b[0m \u001b[0mos\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mremove\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mhashfile_unfinished\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
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"\u001b[0;32m/opt/conda/lib/python3.5/site-packages/nipype/pipeline/engine/nodes.py\u001b[0m in \u001b[0;36m_run_interface\u001b[0;34m(self, execute, updatehash)\u001b[0m\n\u001b[1;32m 480\u001b[0m \u001b[0mold_cwd\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mos\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mgetcwd\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 481\u001b[0m \u001b[0mos\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mchdir\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0moutput_dir\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 482\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_result\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_run_command\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mexecute\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 483\u001b[0m \u001b[0mos\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mchdir\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mold_cwd\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 484\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n",
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"\u001b[0;32m/opt/conda/lib/python3.5/site-packages/nipype/pipeline/engine/nodes.py\u001b[0m in \u001b[0;36m_run_command\u001b[0;34m(self, execute, copyfiles)\u001b[0m\n\u001b[1;32m 611\u001b[0m \u001b[0mlogger\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0minfo\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'Running: %s'\u001b[0m \u001b[0;34m%\u001b[0m \u001b[0mcmd\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 612\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 613\u001b[0;31m \u001b[0mresult\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_interface\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mrun\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 614\u001b[0m \u001b[0;32mexcept\u001b[0m \u001b[0mException\u001b[0m \u001b[0;32mas\u001b[0m \u001b[0mmsg\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 615\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_save_results\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mresult\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mcwd\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
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"\u001b[0;32m/opt/conda/lib/python3.5/site-packages/nipype/interfaces/base.py\u001b[0m in \u001b[0;36mrun\u001b[0;34m(self, **inputs)\u001b[0m\n\u001b[1;32m 1079\u001b[0m version=self.version)\n\u001b[1;32m 1080\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1081\u001b[0;31m \u001b[0mruntime\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_run_wrapper\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mruntime\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1082\u001b[0m \u001b[0moutputs\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0maggregate_outputs\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mruntime\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1083\u001b[0m \u001b[0mruntime\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mendTime\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mdt\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0misoformat\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdt\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mutcnow\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
159+
"\u001b[0;32m/opt/conda/lib/python3.5/site-packages/nipype/interfaces/base.py\u001b[0m in \u001b[0;36m_run_wrapper\u001b[0;34m(self, runtime)\u001b[0m\n\u001b[1;32m 1027\u001b[0m \u001b[0mruntime\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0menviron\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m'DISPLAY'\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;34m':%d'\u001b[0m \u001b[0;34m%\u001b[0m \u001b[0mvdisp_num\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1028\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1029\u001b[0;31m \u001b[0mruntime\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_run_interface\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mruntime\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1030\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1031\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_redirect_x\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
160+
"\u001b[0;32m/opt/conda/lib/python3.5/site-packages/nipype/interfaces/utility/wrappers.py\u001b[0m in \u001b[0;36m_run_interface\u001b[0;34m(self, runtime)\u001b[0m\n\u001b[1;32m 192\u001b[0m \u001b[0msetattr\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mruntime\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m'runtime_threads'\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mnum_threads\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 193\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 194\u001b[0;31m \u001b[0mout\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mfunction_handle\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m**\u001b[0m\u001b[0margs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 195\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 196\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mlen\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_output_names\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;34m==\u001b[0m \u001b[0;36m1\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
163161
"\u001b[0;32m<string>\u001b[0m in \u001b[0;36mget_random_array\u001b[0;34m(array_shape)\u001b[0m\n",
164-
"\u001b[0;31mNameError\u001b[0m: global name 'random' is not defined\nInterface Function failed to run. "
162+
"\u001b[0;31mNameError\u001b[0m: name 'random' is not defined\nInterface Function failed to run. "
165163
]
166164
}
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],
@@ -190,7 +188,7 @@
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"rndArray.run()\n",
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"\n",
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"# Print output\n",
193-
"print rndArray.result.outputs"
191+
"print(rndArray.result.outputs)"
194192
]
195193
},
196194
{
@@ -210,23 +208,23 @@
210208
"metadata": {
211209
"anaconda-cloud": {},
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"kernelspec": {
213-
"display_name": "Python [default]",
211+
"display_name": "Python 3",
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"language": "python",
215-
"name": "python2"
213+
"name": "python3"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "ipython",
220-
"version": 2
218+
"version": 3
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},
222220
"file_extension": ".py",
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"mimetype": "text/x-python",
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"name": "python",
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"nbconvert_exporter": "python",
226-
"pygments_lexer": "ipython2",
227-
"version": "2.7.13"
224+
"pygments_lexer": "ipython3",
225+
"version": "3.5.2"
228226
}
229227
},
230228
"nbformat": 4,
231-
"nbformat_minor": 0
229+
"nbformat_minor": 1
232230
}

‎notebooks/basic_joinnodes.ipynb

Lines changed: 11 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -17,7 +17,7 @@
1717
"source": [
1818
"## Simple example\n",
1919
"\n",
20-
"Let's consider the very simple example depicted at the top of this page:"
20+
"Let's consider the very simple example depicted at the top of this page (since `A` is not defined, the cell will crash if you try to run):"
2121
]
2222
},
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{
@@ -129,12 +129,12 @@
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"170306-22:38:22,861 workflow INFO:\n",
132+
"170715-22:55:10,963 workflow INFO:\n",
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"\t Workflow joinflow settings: ['check', 'execution', 'logging']\n",
134-
"170306-22:38:22,871 workflow INFO:\n",
134+
"170715-22:55:10,997 workflow INFO:\n",
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"\t Running serially.\n",
136-
"170306-22:38:22,873 workflow INFO:\n",
137-
"\t Executing node joinnode in dir: /tmp/tmpm8NCMb/joinflow/joinnode\n"
136+
"170715-22:55:10,999 workflow INFO:\n",
137+
"\t Executing node joinnode in dir: /tmp/tmp0mqxl90s/joinflow/joinnode\n"
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]
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}
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],
@@ -207,23 +207,23 @@
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"metadata": {
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"anaconda-cloud": {},
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"kernelspec": {
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"display_name": "Python [conda root]",
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"display_name": "Python 3",
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"language": "python",
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"name": "conda-root-py"
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"name": "python3"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "ipython",
217-
"version": 2
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"version": 3
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},
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"file_extension": ".py",
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"mimetype": "text/x-python",
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"name": "python",
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"nbconvert_exporter": "python",
223-
"pygments_lexer": "ipython2",
224-
"version": "2.7.13"
223+
"pygments_lexer": "ipython3",
224+
"version": "3.5.2"
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}
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},
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"nbformat": 4,
228-
"nbformat_minor": 0
228+
"nbformat_minor": 1
229229
}

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