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Add Healthcare samples for Dataset operations. (GoogleCloudPlatform#1372)
* Add Healthcare samples for Dataset operations.
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‎healthcare/v1beta1/DicomStoreSearchInstances.ps1

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# Copyright 2019 Google LLC
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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$cred = gcloud auth print-access-token
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$headers = @{ Authorization = "Bearer $cred" }
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Invoke-RestMethod `
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-Method Get `
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-Headers $headers `
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-ContentType: "application/json; charset=utf-8" `
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-Uri "https://healthcare.googleapis.com/v1alpha1/projects/dzlier-work/locations/us-central1/datasets/dataset-13c3/dicomStores/dicom-store-13c3/dicomWeb/instances"

‎healthcare/v1beta1/dicom-store-search-instances.sh

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# Copyright 2019 Google LLC
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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curl -X GET \
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-H "Authorization: Bearer "$(gcloud auth print-access-token) \
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-H "Content-Type: application/dicom+json; charset=utf-8" \
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"https://healthcare.googleapis.com/v1beta1/projects/dzlier-work/locations/us-central1/datasets/dataset-13c3/dicomStores/dicom-store-13c3/dicomWeb/instances"

‎healthcare/v1beta1/pom.xml

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<?xml version="1.0" encoding="UTF-8"?>
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<project xmlns="http://maven.apache.org/POM/4.0.0"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<groupId>com.google.samples</groupId>
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<artifactId>healthcare-samples</artifactId>
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<version>1.0-SNAPSHOT</version>
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<packaging>jar</packaging>
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<!--
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The parent pom defines common style checks and testing strategies for our samples.
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Removing or replacing it should not affect the execution of the samples in anyway.
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-->
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<parent>
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<groupId>com.google.cloud.samples</groupId>
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<artifactId>shared-configuration</artifactId>
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<version>1.0.10</version>
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</parent>
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<properties>
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<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
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<maven.compiler.target>1.8</maven.compiler.target>
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<maven.compiler.source>1.8</maven.compiler.source>
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</properties>
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<prerequisites>
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<maven>3.5</maven>
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</prerequisites>
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<dependencies>
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<!-- [START dependencies] -->
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<dependency>
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<groupId>com.google.apis</groupId>
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<artifactId>google-api-services-healthcare</artifactId>
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<version>v1beta1-rev20190420-1.28.0</version>
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</dependency>
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<dependency>
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<groupId>com.google.api-client</groupId>
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<artifactId>google-api-client</artifactId>
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<version>1.28.0</version>
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</dependency>
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<dependency>
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<groupId>com.google.cloud</groupId>
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<artifactId>google-cloud-core</artifactId>
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<version>1.71.0</version>
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<scope>compile</scope>
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</dependency>
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<!-- [END dependencies] -->
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<!-- Test dependencies -->
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<dependency>
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<groupId>com.google.truth</groupId>
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<artifactId>truth</artifactId>
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<version>0.44</version>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>junit</groupId>
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<artifactId>junit</artifactId>
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<version>4.12</version>
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</dependency>
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<dependency>
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<groupId>org.apache.httpcomponents</groupId>
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<artifactId>httpmime</artifactId>
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<version>4.5.8</version>
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</dependency>
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</dependencies>
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</project>

‎healthcare/v1beta1/src/main/java/snippets/healthcare/datasets/DatasetCreate.java

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/*
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* Copyright 2019 Google LLC
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*
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*/
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package snippets.healthcare.datasets;
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// [START healthcare_create_dataset]
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import com.google.api.client.googleapis.auth.oauth2.GoogleCredential;
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import com.google.api.client.http.HttpHeaders;
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import com.google.api.client.http.HttpRequestInitializer;
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import com.google.api.client.http.javanet.NetHttpTransport;
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import com.google.api.client.json.JsonFactory;
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import com.google.api.client.json.jackson2.JacksonFactory;
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import com.google.api.services.healthcare.v1beta1.CloudHealthcare;
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import com.google.api.services.healthcare.v1beta1.CloudHealthcare.Projects.Locations.Datasets;
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import com.google.api.services.healthcare.v1beta1.CloudHealthcareScopes;
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import com.google.api.services.healthcare.v1beta1.model.Dataset;
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import com.google.api.services.healthcare.v1beta1.model.Operation;
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import java.io.IOException;
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import java.util.Collections;
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public class DatasetCreate {
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private static final String DATASET_NAME = "projects/%s/locations/%s/datasets/%s";
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private static final JsonFactory JSON_FACTORY = new JacksonFactory();
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private static final NetHttpTransport HTTP_TRANSPORT = new NetHttpTransport();
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public static void datasetCreate(String projectId, String regionId, String datasetId)
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throws IOException {
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// String projectId = "your-project-id";
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// String regionId = "us-central1";
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// String datasetId = "your-dataset-id";
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// Initialize the client, which will be used to interact with the service.
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CloudHealthcare client = createClient();
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// Configure the dataset to be created.
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Dataset dataset = new Dataset();
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dataset.setTimeZone("America/Chicago");
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// Create request and configure any parameters.
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String parentName = String.format("projects/%s/locations/%s", projectId, regionId);
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Datasets.Create request = client.projects().locations().datasets().create(parentName, dataset);
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request.setDatasetId(datasetId);
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// Execute the request, wait for the operation to complete, and process the results.
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try {
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Operation operation = request.execute();
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System.out.println(operation.toPrettyString());
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while (operation.getDone() == null || !operation.getDone()) {
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// Update the status of the operation with another request.
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Thread.sleep(500); // Pause for 500ms between requests.
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operation =
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client
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.projects()
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.locations()
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.datasets()
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.operations()
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.get(operation.getName())
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.execute();
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}
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System.out.println("Dataset created. Response content: " + operation.getResponse());
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} catch (Exception ex) {
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System.out.printf("Error during request execution: %s\n", ex.toString());
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ex.printStackTrace(System.out);
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}
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}
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private static CloudHealthcare createClient() throws IOException {
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// Use Application Default Credentials (ADC) to authenticate the requests
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// For more information see https://cloud.google.com/docs/authentication/production
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GoogleCredential credential =
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GoogleCredential.getApplicationDefault(HTTP_TRANSPORT, JSON_FACTORY)
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.createScoped(Collections.singleton(CloudHealthcareScopes.CLOUD_PLATFORM));
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// Create a HttpRequestInitializer, which will provide a baseline configuration to all requests.
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HttpRequestInitializer requestInitializer =
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request -> {
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credential.initialize(request);
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request.setHeaders(new HttpHeaders().set("X-GFE-SSL", "yes"));
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request.setConnectTimeout(60000); // 1 minute connect timeout
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request.setReadTimeout(60000); // 1 minute read timeout
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};
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// Build the client for interacting with the service.
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return new CloudHealthcare.Builder(HTTP_TRANSPORT, JSON_FACTORY, requestInitializer)
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.setApplicationName("your-application-name")
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.build();
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}
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}
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// [END healthcare_create_dataset]

‎healthcare/v1beta1/src/main/java/snippets/healthcare/datasets/DatasetDeIdentify.java

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/*
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* Copyright 2019 Google LLC
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*
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*/
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package snippets.healthcare.datasets;
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// [START healthcare_deidentify_dataset]
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import com.google.api.client.googleapis.auth.oauth2.GoogleCredential;
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import com.google.api.client.http.HttpHeaders;
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import com.google.api.client.http.HttpRequestInitializer;
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import com.google.api.client.http.javanet.NetHttpTransport;
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import com.google.api.client.json.JsonFactory;
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import com.google.api.client.json.jackson2.JacksonFactory;
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import com.google.api.services.healthcare.v1beta1.CloudHealthcare;
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import com.google.api.services.healthcare.v1beta1.CloudHealthcare.Projects.Locations.Datasets;
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import com.google.api.services.healthcare.v1beta1.CloudHealthcareScopes;
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import com.google.api.services.healthcare.v1beta1.model.DeidentifyConfig;
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import com.google.api.services.healthcare.v1beta1.model.DeidentifyDatasetRequest;
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import com.google.api.services.healthcare.v1beta1.model.DicomConfig;
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import com.google.api.services.healthcare.v1beta1.model.Operation;
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import com.google.api.services.healthcare.v1beta1.model.TagFilterList;
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import java.io.IOException;
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import java.util.Arrays;
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import java.util.Collections;
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public class DatasetDeIdentify {
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private static final String DATASET_NAME = "projects/%s/locations/%s/datasets/%s";
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private static final JsonFactory JSON_FACTORY = new JacksonFactory();
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private static final NetHttpTransport HTTP_TRANSPORT = new NetHttpTransport();
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public static void datasetDeIdentify(String srcDatasetName, String destDatasetName)
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throws IOException {
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// String srcDatasetName =
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// String.format(DATASET_NAME, "your-project-id", "your-region-id", "your-src-dataset-id");
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// String destDatasetName =
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// String.format(DATASET_NAME, "your-project-id", "your-region-id", "your-dest-dataset-id");
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// Initialize the client, which will be used to interact with the service.
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CloudHealthcare client = createClient();
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// Configure what information needs to be De-Identified.
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// For more information on de-identifying using tags, please see the following:
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// https://cloud.google.com/healthcare/docs/how-tos/dicom-deidentify#de-identification_using_tags
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TagFilterList tags = new TagFilterList().setTags(Arrays.asList("PatientID"));
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DicomConfig dicomConfig = new DicomConfig().setKeepList(tags);
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DeidentifyConfig config = new DeidentifyConfig().setDicom(dicomConfig);
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// Create the de-identify request and configure any parameters.
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DeidentifyDatasetRequest deidentifyRequest =
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new DeidentifyDatasetRequest().setDestinationDataset(destDatasetName).setConfig(config);
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Datasets.Deidentify request =
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client.projects().locations().datasets().deidentify(srcDatasetName, deidentifyRequest);
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// Execute the request, wait for the operation to complete, and process the results.
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try {
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Operation operation = request.execute();
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while (operation.getDone() == null || !operation.getDone()) {
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// Update the status of the operation with another request.
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Thread.sleep(500); // Pause for 500ms between requests.
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operation =
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client
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.projects()
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.locations()
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.datasets()
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.operations()
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.get(operation.getName())
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.execute();
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}
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System.out.println(
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"De-identified Dataset created. Response content: " + operation.getResponse());
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} catch (Exception ex) {
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System.out.printf("Error during request execution: %s", ex.toString());
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ex.printStackTrace(System.out);
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}
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}
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private static CloudHealthcare createClient() throws IOException {
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// Use Application Default Credentials (ADC) to authenticate the requests
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// For more information see https://cloud.google.com/docs/authentication/production
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GoogleCredential credential =
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GoogleCredential.getApplicationDefault(HTTP_TRANSPORT, JSON_FACTORY)
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.createScoped(Collections.singleton(CloudHealthcareScopes.CLOUD_PLATFORM));
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// Create a HttpRequestInitializer, which will provide a baseline configuration to all requests.
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HttpRequestInitializer requestInitializer =
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request -> {
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credential.initialize(request);
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request.setHeaders(new HttpHeaders().set("X-GFE-SSL", "yes"));
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request.setConnectTimeout(60000); // 1 minute connect timeout
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request.setReadTimeout(60000); // 1 minute read timeout
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};
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// Build the client for interacting with the service.
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return new CloudHealthcare.Builder(HTTP_TRANSPORT, JSON_FACTORY, requestInitializer)
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.setApplicationName("your-application-name")
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.build();
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}
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}
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// [END healthcare_deidentify_dataset]

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