|
50 | 50 | "\n", |
51 | 51 | " <!--to change the number of rows per column, change the last number in 'pure-u-1-3'.\n", |
52 | 52 | " For example, to have three columns, change the value to 'pure-u-1-3'-->\n", |
53 | | - "\n", |
| 53 | + " \n", |
54 | 54 | " <h2 class=\"domain-header economics-finance-domain\"><a class=\"domain-title\">Introduction</a></h2>\n", |
55 | 55 | " <div class=\"pure-g domain-table-container economics-finance-domain\">\n", |
56 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_nipype.ipynb\">What is Nipype?</a>\n", |
57 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_jupyter-notebook.ipynb\">How to use Jupyter-Notebook</a>\n", |
58 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_dataset.ipynb\">The Tutorial Dataset</a>\n", |
59 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_python.ipynb\">Python (recap)</a>\n", |
| 56 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_nipype.ipynb\">Nipype</a>\n", |
| 57 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_jupyter-notebook.ipynb\">Jupyter-Notebook</a>\n", |
| 58 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_dataset.ipynb\">Tutorial Dataset</a>\n", |
| 59 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_docker.ipynb\">Docker</a>\n", |
| 60 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_python.ipynb\">Python</a>\n", |
60 | 61 | " </div>\n", |
61 | 62 | " <p>This section is meant as a general overview. It should give you a short introduction to the main topics that\n", |
62 | 63 | " you need to understand to use Nipype and this tutorial.</p>\n", |
|
70 | 71 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_data_input.ipynb\">Data Input</a>\n", |
71 | 72 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_data_output.ipynb\">Data Output</a>\n", |
72 | 73 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_iteration.ipynb\">Iteration / Iterables</a>\n", |
73 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_function_nodes.ipynb\">Function Nodes</a>\n", |
74 | 74 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_mapnodes.ipynb\">MapNodes</a>\n", |
75 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_error_and_crashes.ipynb\">Errors & Crashes</a>\n", |
| 75 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_function_nodes.ipynb\">Function Nodes</a>\n", |
| 76 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_import_workflows.ipynb\">Import existing Workflows</a>\n", |
76 | 77 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_plugins.ipynb\">Execution Plugins</a>\n", |
77 | 78 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_configuration.ipynb\">Execution Configuration</a>\n", |
78 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_import_workflows.ipynb\">Import existing Workflows</a>\n", |
| 79 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_error_and_crashes.ipynb\">Errors & Crashes</a>\n", |
79 | 80 | " </div>\n", |
80 | 81 | " <p>This section will introduce you to all of the key players in Nipype. Basic concepts that you need to learn to\n", |
81 | 82 | " fully understand and appreciate Nipype. Once you understand this section, you will know all that you need to know\n", |
82 | 83 | " to create any kind of Nipype workflow.</p>\n", |
83 | 84 | "\n", |
84 | | - " <h2 class=\"domain-header computing\"><a class=\"domain-title\">Workflow Examples</a></h2>\n", |
85 | | - " <div class=\"pure-g domain-table-container computing\">\n", |
| 85 | + " <h2 class=\"domain-header science\"><a class=\"domain-title\">Workflow Examples</a></h2>\n", |
| 86 | + " <div class=\"pure-g domain-table-container science\">\n", |
86 | 87 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/example_preprocessing.ipynb\">Preprocessing</a>\n", |
87 | 88 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/example_1stlevel.ipynb\">1st-level Analysis</a>\n", |
88 | 89 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/example_normalize.ipynb\">Normalize Data</a>\n", |
89 | 90 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/example_2ndlevel.ipynb\">2nd-level Analysis</a>\n", |
90 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/example_metaflow.ipynb\">Metaflow (all at once)</a>\n", |
91 | 91 | " </div>\n", |
92 | 92 | " <p>In this section you will find some practical examples that show you how to use Nipype in a \"real world\" scenario.</p>\n", |
93 | 93 | "\n", |
94 | | - " <h2 class=\"domain-header math\"><a class=\"domain-title\">Useful Resources</a></h2>\n", |
95 | | - " <div class=\"pure-g domain-table-container math\">\n", |
| 94 | + " <h2 class=\"domain-header test-prep\"><a class=\"domain-title\">Useful Resources</a></h2>\n", |
| 95 | + " <div class=\"pure-g domain-table-container test-prep\">\n", |
96 | 96 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/resources_installation.ipynb\">Install Nipype</a>\n", |
97 | 97 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/resources_resources.ipynb\">Helpful Resources/Links</a>\n", |
98 | 98 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/resources_help.ipynb\">Help</a>\n", |
|
126 | 126 | "<hr/>\n", |
127 | 127 | "\n", |
128 | 128 | "<h2>You want to help with this tutorial?</h2>\n", |
129 | | - "<p>You can find the github repo of this tutorial under <a href=\"https://github.com/miykael/nipype_course\">https://github.com/miykael/nipype_course</a>.\n", |
| 129 | + "<p>Find the github repo of this tutorial under <a href=\"https://github.com/miykael/nipype_course\">https://github.com/miykael/nipype_course</a>.\n", |
130 | 130 | " Feel free to send a pull request or leave an <a href=\"https://github.com/miykael/nipype_tutorial/issues\">issue</a> with your feedback or ideas.\n", |
131 | 131 | "</p>\n", |
132 | 132 | "To inspect the html code of this page, click: <form action=\"javascript:code_toggle()\"><input type=\"submit\" value=\"Show HTML code\"></form>" |
|
178 | 178 | "\n", |
179 | 179 | " <!--to change the number of rows per column, change the last number in 'pure-u-1-3'.\n", |
180 | 180 | " For example, to have three columns, change the value to 'pure-u-1-3'-->\n", |
181 | | - "\n", |
| 181 | + " \n", |
182 | 182 | " <h2 class=\"domain-header economics-finance-domain\"><a class=\"domain-title\">Introduction</a></h2>\n", |
183 | 183 | " <div class=\"pure-g domain-table-container economics-finance-domain\">\n", |
184 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_nipype.ipynb\">What is Nipype?</a>\n", |
185 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_jupyter-notebook.ipynb\">How to use Jupyter-Notebook</a>\n", |
186 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_dataset.ipynb\">The Tutorial Dataset</a>\n", |
187 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_python.ipynb\">Python (recap)</a>\n", |
| 184 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_nipype.ipynb\">Nipype</a>\n", |
| 185 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_jupyter-notebook.ipynb\">Jupyter-Notebook</a>\n", |
| 186 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_dataset.ipynb\">Tutorial Dataset</a>\n", |
| 187 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_docker.ipynb\">Docker</a>\n", |
| 188 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/introduction_python.ipynb\">Python</a>\n", |
188 | 189 | " </div>\n", |
189 | 190 | " <p>This section is meant as a general overview. It should give you a short introduction to the main topics that\n", |
190 | 191 | " you need to understand to use Nipype and this tutorial.</p>\n", |
|
198 | 199 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_data_input.ipynb\">Data Input</a>\n", |
199 | 200 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_data_output.ipynb\">Data Output</a>\n", |
200 | 201 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_iteration.ipynb\">Iteration / Iterables</a>\n", |
201 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_function_nodes.ipynb\">Function Nodes</a>\n", |
202 | 202 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_mapnodes.ipynb\">MapNodes</a>\n", |
203 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_error_and_crashes.ipynb\">Errors & Crashes</a>\n", |
| 203 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_function_nodes.ipynb\">Function Nodes</a>\n", |
| 204 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_import_workflows.ipynb\">Import existing Workflows</a>\n", |
204 | 205 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_plugins.ipynb\">Execution Plugins</a>\n", |
205 | 206 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_configuration.ipynb\">Execution Configuration</a>\n", |
206 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_import_workflows.ipynb\">Import existing Workflows</a>\n", |
| 207 | + " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/basic_error_and_crashes.ipynb\">Errors & Crashes</a>\n", |
207 | 208 | " </div>\n", |
208 | 209 | " <p>This section will introduce you to all of the key players in Nipype. Basic concepts that you need to learn to\n", |
209 | 210 | " fully understand and appreciate Nipype. Once you understand this section, you will know all that you need to know\n", |
210 | 211 | " to create any kind of Nipype workflow.</p>\n", |
211 | 212 | "\n", |
212 | | - " <h2 class=\"domain-header computing\"><a class=\"domain-title\">Workflow Examples</a></h2>\n", |
213 | | - " <div class=\"pure-g domain-table-container computing\">\n", |
| 213 | + " <h2 class=\"domain-header science\"><a class=\"domain-title\">Workflow Examples</a></h2>\n", |
| 214 | + " <div class=\"pure-g domain-table-container science\">\n", |
214 | 215 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/example_preprocessing.ipynb\">Preprocessing</a>\n", |
215 | 216 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/example_1stlevel.ipynb\">1st-level Analysis</a>\n", |
216 | 217 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/example_normalize.ipynb\">Normalize Data</a>\n", |
217 | 218 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/example_2ndlevel.ipynb\">2nd-level Analysis</a>\n", |
218 | | - " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/example_metaflow.ipynb\">Metaflow (all at once)</a>\n", |
219 | 219 | " </div>\n", |
220 | 220 | " <p>In this section you will find some practical examples that show you how to use Nipype in a \"real world\" scenario.</p>\n", |
221 | 221 | "\n", |
222 | | - " <h2 class=\"domain-header math\"><a class=\"domain-title\">Useful Resources</a></h2>\n", |
223 | | - " <div class=\"pure-g domain-table-container math\">\n", |
| 222 | + " <h2 class=\"domain-header test-prep\"><a class=\"domain-title\">Useful Resources</a></h2>\n", |
| 223 | + " <div class=\"pure-g domain-table-container test-prep\">\n", |
224 | 224 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/resources_installation.ipynb\">Install Nipype</a>\n", |
225 | 225 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/resources_resources.ipynb\">Helpful Resources/Links</a>\n", |
226 | 226 | " <a class=\"subject-link pure-u-1-4\" target=\"_blank\" href=\"notebooks/resources_help.ipynb\">Help</a>\n", |
|
254 | 254 | "<hr/>\n", |
255 | 255 | "\n", |
256 | 256 | "<h2>You want to help with this tutorial?</h2>\n", |
257 | | - "<p>You can find the github repo of this tutorial under <a href=\"https://github.com/miykael/nipype_course\">https://github.com/miykael/nipype_course</a>.\n", |
| 257 | + "<p>Find the github repo of this tutorial under <a href=\"https://github.com/miykael/nipype_course\">https://github.com/miykael/nipype_course</a>.\n", |
258 | 258 | " Feel free to send a pull request or leave an <a href=\"https://github.com/miykael/nipype_tutorial/issues\">issue</a> with your feedback or ideas.\n", |
259 | 259 | "</p>\n", |
260 | 260 | "To inspect the html code of this page, click: <form action=\"javascript:code_toggle()\"><input type=\"submit\" value=\"Show HTML code\"></form>" |
|
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