updating exercises that they work with the extension

djarecka · djarecka · commit 63ae04bacb75 · 2017-11-20T18:32:35.000-05:00
diff --git a/notebooks/basic_interfaces.ipynb b/notebooks/basic_interfaces.ipynb
@@ -571,7 +571,10 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "solution2": "hidden",
+    "solution2_first": true
+   },
    "source": [
     "#### Exercise 1a\n",
     "Import `IsotropicSmooth` from `nipype.interfaces.fsl` and find  the `FSL` command that is being run. What are the mandatory inputs for this interface?"
@@ -580,7 +583,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "solution2": "hidden"
+   },
    "outputs": [],
    "source": [
     "from nipype.interfaces.fsl import IsotropicSmooth\n",
@@ -591,16 +596,21 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "solution2": "hidden",
+    "solution2_first": true
+   },
    "source": [
     "#### Exercise 1b\n",
-    "Run the `IsotropicSmooth` for `/data/ds000114/sub-01/ses-test/anat/sub-01_ses-test_T1w.nii.gz` file with a smoothing kernel 4 (TODO):"
+    "Run the `IsotropicSmooth` for `/data/ds000114/sub-01/ses-test/anat/sub-01_ses-test_T1w.nii.gz` file with a smoothing kernel 4mm:"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "solution2": "hidden"
+   },
    "outputs": [],
    "source": [
     "smoothing = IsotropicSmooth()\n",
@@ -612,7 +622,10 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "solution2": "hidden",
+    "solution2_first": true
+   },
    "source": [
     "#### Exercise 1c\n",
     "Plot the output of your interface."
@@ -621,7 +634,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "solution2": "hidden"
+   },
    "outputs": [],
    "source": [
     "# we will be using plot_anat from nilearn package\n",
@@ -630,13 +645,6 @@
     "plot_anat('/output/T1w_nipype_smooth.nii.gz', title='after smoothing',\n",
     "          display_mode='ortho', dim=-1, draw_cross=False, annotate=False)"
    ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": []
   }
  ],
  "metadata": {
diff --git a/notebooks/basic_nodes.ipynb b/notebooks/basic_nodes.ipynb
@@ -207,7 +207,10 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "solution2": "hidden",
+    "solution2_first": true
+   },
    "source": [
     "#### Exercise 1a\n",
     "Define a `Node` for `IsotropicSmooth` (from `fsl`). Run the node for T1 image for one of the subjects."
@@ -216,7 +219,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "solution2": "hidden"
+   },
    "outputs": [],
    "source": [
     "# Import the Node module\n",
@@ -234,25 +239,21 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "solution2": "hidden",
+    "solution2_first": true
+   },
    "source": [
-    "#### Exercise 2a\n",
+    "#### Exercise 1b\n",
     "Plot the original image and the image after smoothing."
    ]
   },
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "smooth_res.outputs.out_file"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "solution2": "hidden"
+   },
    "outputs": [],
    "source": [
     "%pylab inline\n",
@@ -262,13 +263,6 @@
     "plot_anat(smooth_res.outputs.out_file, title='smooth output', cut_coords=(10,10,10),\n",
     "          display_mode='ortho',draw_cross=False, annotate=False)"
    ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": []
   }
  ],
  "metadata": {
