It sped up this query a lot - 2.5s down to 300ms:

select
  repos.full_name,
  json_object(
    'href', 'https://github.com/' || repos.full_name || '/issues/' || issues.number,
    'label', '#' || issues.number
  ) as issue,
  issues.title,
  users.login,
  users.id,
  issues.state,
  issues.locked,
  issues.assignee,
  issues.milestone,
  issues.comments,
  issues.created_at,
  issues.updated_at,
  issues.closed_at,
  issues.author_association,
  issues.pull_request,
  issues.repo,
  issues.type
from
  issues
  join repos on repos.id = issues.repo
  join users on issues.user = users.id
where
  issues.state = 'open'
  and issues.user not in (9599, 27856297)
  and not exists (
    select
      id
    from
      issue_comments
    where
      issue_comments.user = 9599
      and issues.id = issue_comments.issue
  )
order by
  issues.updated_at desc;

Create index on issue_comments(user) and other foreign keys #35

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