Merge pull request miykael#138 from adelavega/update_pybids

miykael · web-flow · commit 85990a97b8c0 · 2019-05-02T13:44:13.000+02:00
Update pybids to 0.7
diff --git a/Dockerfile b/Dockerfile
@@ -132,7 +132,7 @@ RUN export PATH="/opt/miniconda-latest/bin:$PATH" \
     && bash -c "source activate neuro \
     &&   pip install --no-cache-dir  \
              https://github.com/nipy/nipype/tarball/master \
-             https://github.com/INCF/pybids/tarball/0.6.5 \
+             https://github.com/INCF/pybids/tarball/0.7.1 \
              nilearn \
              datalad[full] \
              nipy \
@@ -240,7 +240,7 @@ RUN echo '{ \
     \n        ], \
     \n        "pip_install": [ \
     \n          "https://github.com/nipy/nipype/tarball/master", \
-    \n          "https://github.com/INCF/pybids/tarball/0.6.5", \
+    \n          "https://github.com/INCF/pybids/tarball/0.7.1", \
     \n          "nilearn", \
     \n          "datalad[full]", \
     \n          "nipy", \
diff --git a/Singularity b/Singularity
@@ -122,7 +122,7 @@ sync && conda clean -tipsy && sync
 bash -c "source activate neuro
   pip install --no-cache-dir  \
       https://github.com/nipy/nipype/tarball/master \
-      https://github.com/INCF/pybids/tarball/0.6.5 \
+      https://github.com/INCF/pybids/tarball/0.7.1 \
       nilearn \
       datalad[full] \
       nipy \
@@ -232,7 +232,7 @@ echo '{
 \n        ],
 \n        "pip_install": [
 \n          "https://github.com/nipy/nipype/tarball/master",
-\n          "https://github.com/INCF/pybids/tarball/0.6.5",
+\n          "https://github.com/INCF/pybids/tarball/0.7.1",
 \n          "nilearn",
 \n          "datalad[full]",
 \n          "nipy",
diff --git a/generate.sh b/generate.sh
@@ -17,7 +17,7 @@ generate_docker() {
              conda_install="python=3.6 pytest jupyter jupyterlab jupyter_contrib_nbextensions
                             traits pandas matplotlib scikit-learn scikit-image seaborn nbformat nb_conda" \
              pip_install="https://github.com/nipy/nipype/tarball/master
-                          https://github.com/INCF/pybids/tarball/0.6.5
+                          https://github.com/INCF/pybids/tarball/0.7.1
                           nilearn datalad[full] nipy duecredit nbval" \
              create_env="neuro" \
              activate=True \
@@ -55,7 +55,7 @@ generate_singularity() {
              conda_install="python=3.6 pytest jupyter jupyterlab jupyter_contrib_nbextensions
                             traits pandas matplotlib scikit-learn scikit-image seaborn nbformat nb_conda" \
              pip_install="https://github.com/nipy/nipype/tarball/master
-                          https://github.com/INCF/pybids/tarball/0.6.5
+                          https://github.com/INCF/pybids/tarball/0.7.1
                           nilearn datalad[full] nipy duecredit nbval" \
              create_env="neuro" \
              activate=True \
diff --git a/notebooks/basic_data_input_bids.ipynb b/notebooks/basic_data_input_bids.ipynb
