net-vips multiple IFD OME-TIFF #4353
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stevenswan
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Help wanted
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Hello @stevenswan, Does it matter if all pages have a copy of the metadata? I think QuPath is OK with many copies, as far as I know. |
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Thanks for the quick response. After reading your comment I did some more testing and found the issue in opening my tiff in imageJ was because an incorrect type attribute on my OME-XML Pixel tag. thanks for the help. |
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Hi there, I'm trying to use net-vips to create an OME-TIFF and open it in ImageJ.
I'm very new to the OME-TIFF format so I might be misunderstanding some things.
I'm trying to load in the "multi-channel-z-series.ome.tiff " from https://docs.openmicroscopy.org/ome-model/5.6.3/ome-tiff/data.html
and rebuild it to test that my output is the same so that in future I can create my own OME-TIFF files.
I'm trying to create an IFD for each page (image?) and have the ome-xml in the first IFD only. The issue I'm having is when I call TiffSave it looks like from what I can see with "exiftool -v3" that the xml is written to all my IFD's even if I explicitly set the image-description tags of the other pages to a different value.
I have three methods In my TiffCreator class.
After I call TiffSave in AddStringToFirstIFD I notice that all my IFD's have the ome-xml in it rather than just the first IFD.
Any help would be much appreciated.
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