Merge pull request #3346 from oesteban/maint/references-varname

oesteban · web-flow · commit 72aac961cc53 · 2021-07-16T10:31:33.000+02:00
STY: Make private member name consistent with the rest of them
diff --git a/nipype/algorithms/confounds.py b/nipype/algorithms/confounds.py
@@ -104,7 +104,7 @@ class ComputeDVARS(BaseInterface):
 
     input_spec = ComputeDVARSInputSpec
     output_spec = ComputeDVARSOutputSpec
-    references_ = [
+    _references = [
         {
             "entry": BibTeX(
                 """\
@@ -311,7 +311,7 @@ class FramewiseDisplacement(BaseInterface):
     input_spec = FramewiseDisplacementInputSpec
     output_spec = FramewiseDisplacementOutputSpec
 
-    references_ = [
+    _references = [
         {
             "entry": BibTeX(
                 """\
@@ -556,7 +556,7 @@ class CompCor(SimpleInterface):
 
     input_spec = CompCorInputSpec
     output_spec = CompCorOutputSpec
-    references_ = [
+    _references = [
         {
             "tags": ["method", "implementation"],
             "entry": BibTeX(
diff --git a/nipype/interfaces/afni/base.py b/nipype/interfaces/afni/base.py
@@ -151,7 +151,7 @@ class AFNICommand(AFNICommandBase):
     input_spec = AFNICommandInputSpec
     _outputtype = None
 
-    references_ = [
+    _references = [
         {
             "entry": BibTeX(
                 "@article{Cox1996,"
diff --git a/nipype/interfaces/afni/utils.py b/nipype/interfaces/afni/utils.py
@@ -1032,7 +1032,7 @@ class Edge3(AFNICommand):
     _cmd = "3dedge3"
     input_spec = Edge3InputSpec
     output_spec = AFNICommandOutputSpec
-    references_ = [
+    _references = [
         {
             "entry": BibTeX(
                 """\
@@ -1341,7 +1341,7 @@ class FWHMx(AFNICommandBase):
     input_spec = FWHMxInputSpec
     output_spec = FWHMxOutputSpec
 
-    references_ = [
+    _references = [
         {
             "entry": BibTeX(
                 "@article{CoxReynoldsTaylor2016,"
diff --git a/nipype/interfaces/ants/segmentation.py b/nipype/interfaces/ants/segmentation.py
@@ -1734,7 +1734,7 @@ class KellyKapowski(ANTSCommand):
     input_spec = KellyKapowskiInputSpec
     output_spec = KellyKapowskiOutputSpec
 
-    references_ = [
+    _references = [
         {
             "entry": BibTeX(
                 """\
diff --git a/nipype/interfaces/base/core.py b/nipype/interfaces/base/core.py
@@ -161,7 +161,7 @@ class BaseInterface(Interface):
     _version = None
     _additional_metadata = []
     _redirect_x = False
-    references_ = []
+    _references = []
     resource_monitor = True  # Enabled for this interface IFF enabled in the config
     _etelemetry_version_data = None
 
@@ -343,7 +343,7 @@ def _run_interface(self, runtime):
 
     def _duecredit_cite(self):
         """Add the interface references to the duecredit citations"""
-        for r in self.references_:
+        for r in self._references:
             r["path"] = self.__module__
             due.cite(**r)
 
diff --git a/nipype/interfaces/base/support.py b/nipype/interfaces/base/support.py
@@ -322,7 +322,7 @@ def _outputs_help(cls):
 
 def _refs_help(cls):
     """Prints interface references."""
-    references = getattr(cls, "references_", None)
+    references = getattr(cls, "_references", None)
     if not references:
         return []
 
diff --git a/nipype/interfaces/fsl/base.py b/nipype/interfaces/fsl/base.py
@@ -151,7 +151,7 @@ class FSLCommand(CommandLine):
     input_spec = FSLCommandInputSpec
     _output_type = None
 
-    references_ = [
+    _references = [
         {
             "entry": BibTeX(
                 "@article{JenkinsonBeckmannBehrensWoolrichSmith2012,"
diff --git a/nipype/interfaces/fsl/model.py b/nipype/interfaces/fsl/model.py
@@ -1100,7 +1100,7 @@ class FLAMEO(FSLCommand):
     input_spec = FLAMEOInputSpec
     output_spec = FLAMEOOutputSpec
 
-    references_ = [
+    _references = [
         {
             "entry": BibTeX(
                 "@article{BeckmannJenkinsonSmith2003,"
diff --git a/nipype/interfaces/petpvc.py b/nipype/interfaces/petpvc.py
@@ -155,7 +155,7 @@ class PETPVC(CommandLine):
     output_spec = PETPVCOutputSpec
     _cmd = "petpvc"
 
-    references_ = [
+    _references = [
         {
             "entry": BibTeX(
                 "@article{0031-9155-61-22-7975,"
diff --git a/nipype/interfaces/quickshear.py b/nipype/interfaces/quickshear.py
@@ -75,7 +75,7 @@ class Quickshear(CommandLine):
     input_spec = QuickshearInputSpec
     output_spec = QuickshearOutputSpec
 
-    references_ = [
+    _references = [
         {
             "entry": BibTeX(
                 "@inproceedings{Schimke2011,"
diff --git a/nipype/interfaces/spm/base.py b/nipype/interfaces/spm/base.py
@@ -290,7 +290,7 @@ class SPMCommand(BaseInterface):
     _paths = None
     _use_mcr = None
 
-    references_ = [
+    _references = [
         {
             "entry": BibTeX(
                 "@book{FrackowiakFristonFrithDolanMazziotta1997,"

Original file line number	Diff line number	Diff line change
`@@ -151,7 +151,7 @@ class AFNICommand(AFNICommandBase):`
`151`	`151`	`input_spec = AFNICommandInputSpec`
`152`	`152`	`_outputtype = None`
`153`	`153`
`154`		`- references_ = [`
	`154`	`+ _references = [`
`155`	`155`	`{`
`156`	`156`	`"entry": BibTeX(`
`157`	`157`	`"@article{Cox1996,"`
Original file line number	Diff line number	Diff line change
`@@ -1734,7 +1734,7 @@ class KellyKapowski(ANTSCommand):`
`1734`	`1734`	`input_spec = KellyKapowskiInputSpec`
`1735`	`1735`	`output_spec = KellyKapowskiOutputSpec`
`1736`	`1736`
`1737`		`- references_ = [`
	`1737`	`+ _references = [`
`1738`	`1738`	`{`
`1739`	`1739`	`"entry": BibTeX(`
`1740`	`1740`	`"""\`
Original file line number	Diff line number	Diff line change
`@@ -151,7 +151,7 @@ class FSLCommand(CommandLine):`
`151`	`151`	`input_spec = FSLCommandInputSpec`
`152`	`152`	`_output_type = None`
`153`	`153`
`154`		`- references_ = [`
	`154`	`+ _references = [`
`155`	`155`	`{`
`156`	`156`	`"entry": BibTeX(`
`157`	`157`	`"@article{JenkinsonBeckmannBehrensWoolrichSmith2012,"`
Original file line number	Diff line number	Diff line change
`@@ -1100,7 +1100,7 @@ class FLAMEO(FSLCommand):`
`1100`	`1100`	`input_spec = FLAMEOInputSpec`
`1101`	`1101`	`output_spec = FLAMEOOutputSpec`
`1102`	`1102`
`1103`		`- references_ = [`
	`1103`	`+ _references = [`
`1104`	`1104`	`{`
`1105`	`1105`	`"entry": BibTeX(`
`1106`	`1106`	`"@article{BeckmannJenkinsonSmith2003,"`
Original file line number	Diff line number	Diff line change
`@@ -155,7 +155,7 @@ class PETPVC(CommandLine):`
`155`	`155`	`output_spec = PETPVCOutputSpec`
`156`	`156`	`_cmd = "petpvc"`
`157`	`157`
`158`		`- references_ = [`
	`158`	`+ _references = [`
`159`	`159`	`{`
`160`	`160`	`"entry": BibTeX(`
`161`	`161`	`"@article{0031-9155-61-22-7975,"`
Original file line number	Diff line number	Diff line change
`@@ -75,7 +75,7 @@ class Quickshear(CommandLine):`
`75`	`75`	`input_spec = QuickshearInputSpec`
`76`	`76`	`output_spec = QuickshearOutputSpec`
`77`	`77`
`78`		`- references_ = [`
	`78`	`+ _references = [`
`79`	`79`	`{`
`80`	`80`	`"entry": BibTeX(`
`81`	`81`	`"@inproceedings{Schimke2011,"`
Original file line number	Diff line number	Diff line change
`@@ -290,7 +290,7 @@ class SPMCommand(BaseInterface):`
`290`	`290`	`_paths = None`
`291`	`291`	`_use_mcr = None`
`292`	`292`
`293`		`- references_ = [`
	`293`	`+ _references = [`
`294`	`294`	`{`
`295`	`295`	`"entry": BibTeX(`
`296`	`296`	`"@book{FrackowiakFristonFrithDolanMazziotta1997,"`