FIX: Path location is updated when symlinked

effigies · effigies · commit bfee0e760cb4 · 2021-06-15T17:18:31.000-04:00
diff --git a/notebooks/basic_nodes.ipynb b/notebooks/basic_nodes.ipynb
@@ -170,8 +170,10 @@
    "metadata": {},
    "outputs": [],
    "source": [
+    "in_file = '/data/ds000114/sub-01/ses-test/anat/sub-01_ses-test_T1w.nii.gz'\n",
+    "\n",
     "# Specify node inputs\n",
-    "bet.inputs.in_file = '/data/ds000114/sub-01/ses-test/anat/sub-01_ses-test_T1w.nii.gz'\n",
+    "bet.inputs.in_file = in_file\n",
     "bet.inputs.out_file = '/output/node_T1w_bet.nii.gz'"
    ]
   },
@@ -200,7 +202,7 @@
     "from nilearn.plotting import plot_anat\n",
     "%matplotlib inline\n",
     "import matplotlib.pyplot as plt\n",
-    "plot_anat(bet.inputs.in_file, title='BET input', cut_coords=(10,10,10),\n",
+    "plot_anat(in_file, title='BET input', cut_coords=(10,10,10),\n",
     "          display_mode='ortho', dim=-1, draw_cross=False, annotate=False);\n",
     "plot_anat(res.outputs.out_file, title='BET output', cut_coords=(10,10,10),\n",
     "          display_mode='ortho', dim=-1, draw_cross=False, annotate=False);"
