ENH: correct datalad parallel command

miykael · miykael · commit 276a9ad40b08 · 2018-06-26T15:50:03.000+02:00
diff --git a/docs/notebooks/basic_data_input.html b/docs/notebooks/basic_data_input.html
@@ -12835,7 +12835,7 @@ <h2 id="FreeSurferSource">FreeSurferSource<a class="anchor-link" href="#FreeSurf
 <div class="prompt input_prompt">In&nbsp;[&nbsp;]:</div>
 <div class="inner_cell">
     <div class="input_area">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="o">!</span>datalad get -r -J4 /data/ds000114/derivatives/freesurfer/sub-01
+<div class=" highlight hl-ipython3"><pre><span></span><span class="o">!</span>datalad get -r -J 4 /data/ds000114/derivatives/freesurfer/sub-01
 </pre></div>
 
 </div>
diff --git a/docs/notebooks/example_normalize.html b/docs/notebooks/example_normalize.html
@@ -11806,7 +11806,7 @@ <h2 id="Preparation">Preparation<a class="anchor-link" href="#Preparation">&#182
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span>%%bash
-datalad get -J4 /data/ds000114/derivatives/fmriprep/sub-0<span class="o">[</span><span class="m">2345789</span><span class="o">]</span>/anat/*h5
+datalad get -J 4 /data/ds000114/derivatives/fmriprep/sub-0<span class="o">[</span><span class="m">2345789</span><span class="o">]</span>/anat/*h5
 </pre></div>
 
 </div>
diff --git a/docs/notebooks/example_preprocessing.html b/docs/notebooks/example_preprocessing.html
@@ -11812,7 +11812,7 @@ <h2 id="Preparation">Preparation<a class="anchor-link" href="#Preparation">&#182
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span>%%bash
-datalad get -J4 /data/ds000114/derivatives/fmriprep/sub-*/anat/*preproc.nii.gz <span class="se">\</span>
+datalad get -J 4 /data/ds000114/derivatives/fmriprep/sub-*/anat/*preproc.nii.gz <span class="se">\</span>
                 /data/ds000114/sub-*/ses-test/func/*fingerfootlips*
 </pre></div>
 
diff --git a/docs/notebooks/handson_preprocessing.html b/docs/notebooks/handson_preprocessing.html
@@ -11807,7 +11807,7 @@ <h2 id="Preparation">Preparation<a class="anchor-link" href="#Preparation">&#182
 <div class="inner_cell">
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span>%%bash
-datalad get -J4 /data/ds000114/sub-0<span class="o">[</span><span class="m">234789</span><span class="o">]</span>/ses-test/anat/sub-0<span class="o">[</span><span class="m">234789</span><span class="o">]</span>_ses-test_T1w.nii.gz <span class="se">\</span>
+datalad get -J 4 /data/ds000114/sub-0<span class="o">[</span><span class="m">234789</span><span class="o">]</span>/ses-test/anat/sub-0<span class="o">[</span><span class="m">234789</span><span class="o">]</span>_ses-test_T1w.nii.gz <span class="se">\</span>
                 /data/ds000114/sub-0<span class="o">[</span><span class="m">234789</span><span class="o">]</span>/ses-test/func/*fingerfootlips*
 </pre></div>
 
diff --git a/docs/notebooks/introduction_dataset.html b/docs/notebooks/introduction_dataset.html
@@ -11896,7 +11896,7 @@ <h1 id="Tutorial-Dataset">Tutorial Dataset<a class="anchor-link" href="#Tutorial
     <div class="input_area">
 <div class=" highlight hl-ipython3"><pre><span></span>%%bash
 <span class="nb">cd</span> /data/ds000114
-datalad get -J4 /data/ds000114/derivatives/fmriprep/sub-*/anat/*preproc.nii.gz <span class="se">\</span>
+datalad get -J 4 /data/ds000114/derivatives/fmriprep/sub-*/anat/*preproc.nii.gz <span class="se">\</span>
                 /data/ds000114/sub-*/ses-test/func/*fingerfootlips*
 </pre></div>
 
diff --git a/notebooks/basic_data_input.ipynb b/notebooks/basic_data_input.ipynb
@@ -651,7 +651,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "!datalad get -r -J4 /data/ds000114/derivatives/freesurfer/sub-01"
+    "!datalad get -r -J 4 /data/ds000114/derivatives/freesurfer/sub-01"
    ]
   },
   {
diff --git a/notebooks/example_normalize.ipynb b/notebooks/example_normalize.ipynb
@@ -27,7 +27,7 @@
    "outputs": [],
    "source": [
     "%%bash\n",
-    "datalad get -J4 /data/ds000114/derivatives/fmriprep/sub-0[2345789]/anat/*h5"
+    "datalad get -J 4 /data/ds000114/derivatives/fmriprep/sub-0[2345789]/anat/*h5"
    ]
   },
   {
diff --git a/notebooks/example_preprocessing.ipynb b/notebooks/example_preprocessing.ipynb
@@ -32,7 +32,7 @@
    "outputs": [],
    "source": [
     "%%bash\n",
-    "datalad get -J4 /data/ds000114/derivatives/fmriprep/sub-*/anat/*preproc.nii.gz \\\n",
+    "datalad get -J 4 /data/ds000114/derivatives/fmriprep/sub-*/anat/*preproc.nii.gz \\\n",
     "                /data/ds000114/sub-*/ses-test/func/*fingerfootlips*"
    ]
   },
diff --git a/notebooks/handson_preprocessing.ipynb b/notebooks/handson_preprocessing.ipynb
@@ -29,7 +29,7 @@
    "outputs": [],
    "source": [
     "%%bash\n",
-    "datalad get -J4 /data/ds000114/sub-0[234789]/ses-test/anat/sub-0[234789]_ses-test_T1w.nii.gz \\\n",
+    "datalad get -J 4 /data/ds000114/sub-0[234789]/ses-test/anat/sub-0[234789]_ses-test_T1w.nii.gz \\\n",
     "                /data/ds000114/sub-0[234789]/ses-test/func/*fingerfootlips*"
    ]
   },
diff --git a/notebooks/introduction_dataset.ipynb b/notebooks/introduction_dataset.ipynb
@@ -68,7 +68,7 @@
    "source": [
     "%%bash\n",
     "cd /data/ds000114\n",
-    "datalad get -J4 /data/ds000114/derivatives/fmriprep/sub-*/anat/*preproc.nii.gz \\\n",
+    "datalad get -J 4 /data/ds000114/derivatives/fmriprep/sub-*/anat/*preproc.nii.gz \\\n",
     "                /data/ds000114/sub-*/ses-test/func/*fingerfootlips*"
    ]
   },

Original file line number	Diff line number	Diff line change
`@@ -651,7 +651,7 @@`
`651`	`651`	`"metadata": {},`
`652`	`652`	`"outputs": [],`
`653`	`653`	`"source": [`
`654`		`- "!datalad get -r -J4 /data/ds000114/derivatives/freesurfer/sub-01"`
	`654`	`+ "!datalad get -r -J 4 /data/ds000114/derivatives/freesurfer/sub-01"`
`655`	`655`	`]`
`656`	`656`	`},`
`657`	`657`	`{`
Original file line number	Diff line number	Diff line change
`@@ -27,7 +27,7 @@`
`27`	`27`	`"outputs": [],`
`28`	`28`	`"source": [`
`29`	`29`	`"%%bash\n",`
`30`		`- "datalad get -J4 /data/ds000114/derivatives/fmriprep/sub-0[2345789]/anat/*h5"`
	`30`	`+ "datalad get -J 4 /data/ds000114/derivatives/fmriprep/sub-0[2345789]/anat/*h5"`
`31`	`31`	`]`
`32`	`32`	`},`
`33`	`33`	`{`
Original file line number	Diff line number	Diff line change
`@@ -32,7 +32,7 @@`
`32`	`32`	`"outputs": [],`
`33`	`33`	`"source": [`
`34`	`34`	`"%%bash\n",`
`35`		`- "datalad get -J4 /data/ds000114/derivatives/fmriprep/sub-/anat/preproc.nii.gz \\\n",`
	`35`	`+ "datalad get -J 4 /data/ds000114/derivatives/fmriprep/sub-/anat/preproc.nii.gz \\\n",`
`36`	`36`	`" /data/ds000114/sub-/ses-test/func/fingerfootlips*"`
`37`	`37`	`]`
`38`	`38`	`},`
Original file line number	Diff line number	Diff line change
`@@ -29,7 +29,7 @@`
`29`	`29`	`"outputs": [],`
`30`	`30`	`"source": [`
`31`	`31`	`"%%bash\n",`
`32`		`- "datalad get -J4 /data/ds000114/sub-0[234789]/ses-test/anat/sub-0[234789]_ses-test_T1w.nii.gz \\\n",`
	`32`	`+ "datalad get -J 4 /data/ds000114/sub-0[234789]/ses-test/anat/sub-0[234789]_ses-test_T1w.nii.gz \\\n",`
`33`	`33`	`" /data/ds000114/sub-0[234789]/ses-test/func/fingerfootlips"`
`34`	`34`	`]`
`35`	`35`	`},`
Original file line number	Diff line number	Diff line change
`@@ -68,7 +68,7 @@`
`68`	`68`	`"source": [`
`69`	`69`	`"%%bash\n",`
`70`	`70`	`"cd /data/ds000114\n",`
`71`		`- "datalad get -J4 /data/ds000114/derivatives/fmriprep/sub-/anat/preproc.nii.gz \\\n",`
	`71`	`+ "datalad get -J 4 /data/ds000114/derivatives/fmriprep/sub-/anat/preproc.nii.gz \\\n",`
`72`	`72`	`" /data/ds000114/sub-/ses-test/func/fingerfootlips*"`
`73`	`73`	`]`
`74`	`74`	`},`