FIX: corrects path to work with new dataset (without fmriprep derivatives)

miykael · miykael · commit 9c646ebb52b9 · 2018-03-20T10:05:07.000+01:00
diff --git a/notebooks/example_1stlevel.ipynb b/notebooks/example_1stlevel.ipynb
@@ -505,43 +505,43 @@
    "source": [
     "plot_stat_map(\n",
     "    '/output/datasink/1stLevel/sub-01/fwhm-4/spmT_0002.nii', title='finger - fwhm=4 - sub-01',\n",
-    "    bg_img='/data/ds000114/sub-01ses-test/anat/sub-01_ses-test_T1w.nii.gz',\n",
+    "    bg_img='/data/ds000114/sub-01/ses-test/anat/sub-01_ses-test_T1w.nii.gz',\n",
     "    threshold=3, display_mode='y', cut_coords=(5, 10, 15, 20), dim=-1)\n",
     "plot_stat_map(\n",
     "    '/output/datasink/1stLevel/sub-02/fwhm-4/spmT_0002.nii', title='finger - fwhm=4 - sub-02',\n",
-    "    bg_img='/data/ds000114/sub-02ses-test/anat/sub-02_ses-test_T1w.nii.gz',\n",
+    "    bg_img='/data/ds000114/sub-02/ses-test/anat/sub-02_ses-test_T1w.nii.gz',\n",
     "    threshold=3, display_mode='y', cut_coords=(5, 10, 15, 20), dim=-1)\n",
     "plot_stat_map(\n",
     "    '/output/datasink/1stLevel/sub-03/fwhm-4/spmT_0002.nii', title='finger - fwhm=4 - sub-03',\n",
-    "    bg_img='/data/ds000114/sub-03ses-test/anat/sub-03_ses-test_T1w.nii.gz',\n",
+    "    bg_img='/data/ds000114/sub-03/ses-test/anat/sub-03_ses-test_T1w.nii.gz',\n",
     "    threshold=3, display_mode='y', cut_coords=(5, 10, 15, 20), dim=-1)\n",
     "plot_stat_map(\n",
     "    '/output/datasink/1stLevel/sub-04/fwhm-4/spmT_0002.nii', title='finger - fwhm=4 - sub-04',\n",
-    "    bg_img='/data/ds000114/sub-04ses-test/anat/sub-04_ses-test_T1w.nii.gz',\n",
+    "    bg_img='/data/ds000114/sub-04/ses-test/anat/sub-04_ses-test_T1w.nii.gz',\n",
     "    threshold=3, display_mode='y', cut_coords=(5, 10, 15, 20), dim=-1)\n",
     "plot_stat_map(\n",
     "    '/output/datasink/1stLevel/sub-05/fwhm-4/spmT_0002.nii', title='finger - fwhm=4 - sub-05',\n",
-    "    bg_img='/data/ds000114/sub-05ses-test/anat/sub-05_ses-test_T1w.nii.gz',\n",
+    "    bg_img='/data/ds000114/sub-05/ses-test/anat/sub-05_ses-test_T1w.nii.gz',\n",
     "    threshold=3, display_mode='y', cut_coords=(5, 10, 15, 20), dim=-1)\n",
     "plot_stat_map(\n",
     "    '/output/datasink/1stLevel/sub-06/fwhm-4/spmT_0002.nii', title='finger - fwhm=4 - sub-06',\n",
-    "    bg_img='/data/ds000114/sub-06ses-test/anat/sub-06_ses-test_T1w.nii.gz',\n",
+    "    bg_img='/data/ds000114/sub-06/ses-test/anat/sub-06_ses-test_T1w.nii.gz',\n",
     "    threshold=3, display_mode='y', cut_coords=(5, 10, 15, 20), dim=-1)\n",
     "plot_stat_map(\n",
     "    '/output/datasink/1stLevel/sub-07/fwhm-4/spmT_0002.nii', title='finger - fwhm=4 - sub-07',\n",
-    "    bg_img='/data/ds000114/sub-07ses-test/anat/sub-07_ses-test_T1w.nii.gz',\n",
+    "    bg_img='/data/ds000114/sub-07/ses-test/anat/sub-07_ses-test_T1w.nii.gz',\n",
     "    threshold=3, display_mode='y', cut_coords=(5, 10, 15, 20), dim=-1)\n",
     "plot_stat_map(\n",
     "    '/output/datasink/1stLevel/sub-08/fwhm-4/spmT_0002.nii', title='finger - fwhm=4 - sub-08',\n",
-    "    bg_img='/data/ds000114/sub-08ses-test/anat/sub-08_ses-test_T1w.nii.gz',\n",
+    "    bg_img='/data/ds000114/sub-08/ses-test/anat/sub-08_ses-test_T1w.nii.gz',\n",
     "    threshold=3, display_mode='y', cut_coords=(5, 10, 15, 20), dim=-1)\n",
     "plot_stat_map(\n",
     "    '/output/datasink/1stLevel/sub-09/fwhm-4/spmT_0002.nii', title='finger - fwhm=4 - sub-09',\n",
-    "    bg_img='/data/ds000114/sub-09ses-test/anat/sub-09_ses-test_T1w.nii.gz',\n",
+    "    bg_img='/data/ds000114/sub-09/ses-test/anat/sub-09_ses-test_T1w.nii.gz',\n",
     "    threshold=3, display_mode='y', cut_coords=(5, 10, 15, 20), dim=-1)\n",
     "plot_stat_map(\n",
     "    '/output/datasink/1stLevel/sub-10/fwhm-4/spmT_0002.nii', title='finger - fwhm=4 - sub-10',\n",
-    "    bg_img='/data/ds000114/sub-10ses-test/anat/sub-10_ses-test_T1w.nii.gz',\n",
+    "    bg_img='/data/ds000114/sub-10/ses-test/anat/sub-10_ses-test_T1w.nii.gz',\n",
     "    threshold=3, display_mode='y', cut_coords=(5, 10, 15, 20), dim=-1)"
    ]
   },
diff --git a/notebooks/example_normalize.ipynb b/notebooks/example_normalize.ipynb
@@ -519,7 +519,7 @@
     "    title='anatomy - ANTs (normalized to ICBM152)', bg_img=anatimg,\n",
     "    threshold=200, display_mode='ortho', cut_coords=(-50, 0, -10))\n",
     "plot_stat_map(\n",
-    "    '/output/datasink/norm_spm/sub-02_fwhm4/wsub-02_t1w_preproc.nii',\n",
+    "    '/output/datasink/norm_spm/sub-02_fwhm4/wsub-02_ses-test_T1w.nii',\n",
     "    title='anatomy - SPM (normalized to SPM\\'s TPM)', bg_img=anatimg,\n",
     "    threshold=200, display_mode='ortho', cut_coords=(-50, 0, -10))"
    ]

Original file line number	Diff line number	Diff line change
`@@ -519,7 +519,7 @@`
`519`	`519`	`" title='anatomy - ANTs (normalized to ICBM152)', bg_img=anatimg,\n",`
`520`	`520`	`" threshold=200, display_mode='ortho', cut_coords=(-50, 0, -10))\n",`
`521`	`521`	`"plot_stat_map(\n",`
`522`		`- " '/output/datasink/norm_spm/sub-02_fwhm4/wsub-02_t1w_preproc.nii',\n",`
	`522`	`+ " '/output/datasink/norm_spm/sub-02_fwhm4/wsub-02_ses-test_T1w.nii',\n",`
`523`	`523`	`" title='anatomy - SPM (normalized to SPM\\'s TPM)', bg_img=anatimg,\n",`
`524`	`524`	`" threshold=200, display_mode='ortho', cut_coords=(-50, 0, -10))"`
`525`	`525`	`]`