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miykaelmiykael
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FIX: changes python kernel to default
1 parent 9e047cc commit e2833df

13 files changed

+44
-82
lines changed

‎index.ipynb

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"metadata": {
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"anaconda-cloud": {},
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"kernelspec": {
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"display_name": "Python 3",
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"display_name": "Python [default]",
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"language": "python",
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"name": "python3"
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},
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.6.3"
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"version": "3.6.4"
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}
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},
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"nbformat": 4,

‎notebooks/basic_configuration.ipynb

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"metadata": {
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"anaconda-cloud": {},
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"kernelspec": {
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"display_name": "Python 3",
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"display_name": "Python [default]",
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"language": "python",
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"name": "python3"
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},
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.6.2"
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"version": "3.6.4"
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}
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},
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"nbformat": 4,

‎notebooks/basic_error_and_crashes.ipynb

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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"%%bash\n",
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"from nipype import SelectFiles, Node, Workflow\n",
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"!nipypecli crash $(pwd)/crash-*selectfiles-*.pklz"
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"!nipypecli crash -r $(pwd)/crash-*selectfiles-*.pklz"
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"wf.config['execution']['crashfile_format'] = 'txt'\n",
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"!cat $(pwd)/crash-*selectfiles-*.txt"
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"from nipype.interfaces.fsl import IsotropicSmooth\n",
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"IsotropicSmooth.help()"
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"from nipype.interfaces.fsl import IsotropicSmooth\n",
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"from nipype.algorithms.misc import Gunzip\n",
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"from nipype.pipeline.engine import MapNode\n",
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"files = ['/data/ds000114/sub-01/func/sub-01_task-fingerfootlips_bold.nii.gz',\n",
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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"metadata": {},
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"outputs": [],
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"source": [
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"from nipype.interfaces.spm import Smooth\n",
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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"metadata": {},
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"outputs": [],
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"source": [
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"from nipype.interfaces.spm import Realign\n",
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"from nipype.interfaces.spm import Realign\n",
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"realign.help()"
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"from nipype.interfaces.afni import Despike\n",
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"from nipype import SelectFiles, Node, Workflow\n",
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"metadata": {},
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"outputs": [],
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"source": [
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"# Create a new node\n",
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"metadata": {
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"anaconda-cloud": {},
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"kernelspec": {
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"display_name": "Python 3",
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"display_name": "Python [default]",
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"language": "python",
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"name": "python3"
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},

‎notebooks/basic_model_specification.ipynb

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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python 3",
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"display_name": "Python [default]",
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"language": "python",
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"name": "python3"
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},
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.6.2"
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"version": "3.6.4"
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}
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},
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"nbformat": 4,

‎notebooks/basic_plugins.ipynb

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"metadata": {
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"anaconda-cloud": {},
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"kernelspec": {
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"display_name": "Python 3",
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"display_name": "Python [default]",
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"language": "python",
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"name": "python3"
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},
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.6.2"
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"version": "3.6.4"
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}
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},
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"nbformat": 4,

‎notebooks/introduction_docker.ipynb

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"metadata": {
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"anaconda-cloud": {},
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"kernelspec": {
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"display_name": "Python 3",
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"display_name": "Python [default]",
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"language": "python",
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"name": "python3"
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},
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.6.3"
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"version": "3.6.4"
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}
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},
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"nbformat": 4,

‎notebooks/introduction_jupyter-notebook.ipynb

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"metadata": {
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"anaconda-cloud": {},
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"kernelspec": {
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"display_name": "Python [default]",
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"language": "python",
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},
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.6.4"
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}
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},
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"nbformat": 4,

‎notebooks/introduction_nipype.ipynb

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"metadata": {
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"anaconda-cloud": {},
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"kernelspec": {
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},
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.6.4"
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}
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},
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"nbformat": 4,

‎notebooks/introduction_python.ipynb

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"metadata": {
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"anaconda-cloud": {},
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"kernelspec": {
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.6.4"
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}
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},
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"nbformat": 4,

‎notebooks/resources_help.ipynb

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"metadata": {
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"anaconda-cloud": {},
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"language": "python",
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"name": "python3"
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.6.4"
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}
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},
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"nbformat": 4,

‎notebooks/resources_installation.ipynb

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"metadata": {
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"anaconda-cloud": {},
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.6.4"
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}
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},
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"nbformat": 4,

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