Skip to content

Commit eb9d975

Browse files
djareckadjarecka
committed
removing all outputs
1 parent 038eacb commit eb9d975

31 files changed

+413
-10104
lines changed

‎notebooks/basic_configuration.ipynb

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -145,7 +145,7 @@
145145
"name": "python",
146146
"nbconvert_exporter": "python",
147147
"pygments_lexer": "ipython3",
148-
"version": "3.6.2"
148+
"version": "3.5.2"
149149
}
150150
},
151151
"nbformat": 4,

‎notebooks/basic_data_input.ipynb

Lines changed: 8 additions & 112 deletions
Original file line numberDiff line numberDiff line change
@@ -239,28 +239,7 @@
239239
"cell_type": "code",
240240
"execution_count": null,
241241
"metadata": {},
242-
"outputs": [
243-
{
244-
"name": "stdout",
245-
"output_type": "stream",
246-
"text": [
247-
"170731-16:49:15,196 workflow INFO:\n",
248-
"\t Executing node datagrabber in dir: /tmp/tmpzjje_eve/datagrabber\n"
249-
]
250-
},
251-
{
252-
"data": {
253-
"text/plain": [
254-
"\n",
255-
"anat = /data/ds000114/sub-01/ses-test/anat/sub-01_ses-test_T1w.nii.gz\n",
256-
"func = /data/ds000114/sub-01/ses-test/func/sub-01_ses-test_task-fingerfootlips_bold.nii.gz"
257-
]
258-
},
259-
"execution_count": null,
260-
"metadata": {},
261-
"output_type": "execute_result"
262-
}
263-
],
242+
"outputs": [],
264243
"source": [
265244
"dg.run().outputs"
266245
]
@@ -325,28 +304,7 @@
325304
"cell_type": "code",
326305
"execution_count": null,
327306
"metadata": {},
328-
"outputs": [
329-
{
330-
"name": "stdout",
331-
"output_type": "stream",
332-
"text": [
333-
"170731-16:49:26,226 workflow INFO:\n",
334-
"\t Executing node selectfiles in dir: /tmp/tmph1rm2buv/selectfiles\n"
335-
]
336-
},
337-
{
338-
"data": {
339-
"text/plain": [
340-
"\n",
341-
"anat = /data/ds000114/sub-01/ses-test/anat/sub-01_ses-test_T1w.nii.gz\n",
342-
"func = /data/ds000114/sub-01/ses-test/func/sub-01_ses-test_task-fingerfootlips_bold.nii.gz"
343-
]
344-
},
345-
"execution_count": null,
346-
"metadata": {},
347-
"output_type": "execute_result"
348-
}
349-
],
307+
"outputs": [],
350308
"source": [
351309
"sf.run().outputs"
352310
]
@@ -368,27 +326,7 @@
368326
"cell_type": "code",
369327
"execution_count": null,
370328
"metadata": {},
371-
"outputs": [
372-
{
373-
"name": "stdout",
374-
"output_type": "stream",
375-
"text": [
376-
"170731-16:49:27,447 workflow INFO:\n",
377-
"\t Executing node selectfiles in dir: /tmp/tmperd7urq6/selectfiles\n"
378-
]
379-
},
380-
{
381-
"data": {
382-
"text/plain": [
383-
"\n",
384-
"anat = ['/data/ds000114/sub-01/ses-test/anat/sub-01_ses-test_T1w.nii.gz', '/data/ds000114/sub-02/ses-test/anat/sub-02_ses-test_T1w.nii.gz']"
385-
]
386-
},
387-
"execution_count": null,
388-
"metadata": {},
389-
"output_type": "execute_result"
390-
}
391-
],
329+
"outputs": [],
392330
"source": [
393331
"from nipype import SelectFiles, Node\n",
394332
"from os.path import abspath as opap\n",
@@ -483,16 +421,7 @@
483421
"cell_type": "code",
484422
"execution_count": null,
485423
"metadata": {},
486-
"outputs": [
487-
{
488-
"name": "stdout",
489-
"output_type": "stream",
490-
"text": [
491-
"170731-16:49:48,883 workflow INFO:\n",
492-
"\t Executing node fssource in dir: /tmp/tmpg2wzxfkr/fssource\n"
493-
]
494-
}
495-
],
424+
"outputs": [],
496425
"source": [
497426
"fssource.inputs.subject_id = 'sub-01'\n",
498427
"result = fssource.run() "
@@ -509,20 +438,7 @@
509438
"cell_type": "code",
510439
"execution_count": null,
511440
"metadata": {},
512-
"outputs": [
513-
{
514-
"name": "stdout",
515-
"output_type": "stream",
516-
"text": [
517-
"aparc_aseg: ['/data/ds000114/derivatives/freesurfer/sub-01/mri/aparc+aseg.mgz', '/data/ds000114/derivatives/freesurfer/sub-01/mri/aparc.a2009s+aseg.mgz', '/data/ds000114/derivatives/freesurfer/sub-01/mri/aparc.dktatlas+aseg.mgz']\n",
518-
"\n",
519-
"brainmask: /data/ds000114/derivatives/freesurfer/sub-01/mri/brainmask.mgz\n",
520-
"\n",
521-
"inflated: ['/data/ds000114/derivatives/freesurfer/sub-01/surf/lh.inflated', '/data/ds000114/derivatives/freesurfer/sub-01/surf/rh.inflated']\n",
522-
"\n"
523-
]
524-
}
525-
],
441+
"outputs": [],
526442
"source": [
527443
"print('aparc_aseg: %s\\n' % result.outputs.aparc_aseg)\n",
528444
"print('brainmask: %s\\n' % result.outputs.brainmask)\n",
@@ -540,16 +456,7 @@
540456
"cell_type": "code",
541457
"execution_count": null,
542458
"metadata": {},
543-
"outputs": [
544-
{
545-
"name": "stdout",
546-
"output_type": "stream",
547-
"text": [
548-
"170731-16:49:59,487 workflow INFO:\n",
549-
"\t Executing node fssource in dir: /tmp/tmpg2wzxfkr/fssource\n"
550-
]
551-
}
552-
],
459+
"outputs": [],
553460
"source": [
554461
"fssource.inputs.hemi = 'lh'\n",
555462
"result = fssource.run()"
@@ -566,18 +473,7 @@
566473
"cell_type": "code",
567474
"execution_count": null,
568475
"metadata": {},
569-
"outputs": [
570-
{
571-
"data": {
572-
"text/plain": [
573-
"'/data/ds000114/derivatives/freesurfer/sub-01/surf/lh.inflated'"
574-
]
575-
},
576-
"execution_count": null,
577-
"metadata": {},
578-
"output_type": "execute_result"
579-
}
580-
],
476+
"outputs": [],
581477
"source": [
582478
"result.outputs.inflated"
583479
]
@@ -607,7 +503,7 @@
607503
"name": "python",
608504
"nbconvert_exporter": "python",
609505
"pygments_lexer": "ipython3",
610-
"version": "3.6.2"
506+
"version": "3.5.2"
611507
}
612508
},
613509
"nbformat": 4,

0 commit comments

Comments
 (0)