Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
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Updated
Nov 19, 2024 - R
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singlecellexperiment
Here are 5 public repositories matching this topic...
R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
python
wrapper
bioinformatics
dimensionality-reduction
tsne
forceatlas2
umap
dimension-reduction
force-directed-graphs
wrappers
seurat
singlecellexperiment
singlecellexperiment-objects
paga
phate
opentsne
pacmap
dimensional-reduction
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Updated
Oct 8, 2024 - R
Brings SingleCellExperiment objects to the tidyverse
ggplot2
dplyr
plotly
tidyverse
bioconductor
tibble
tidyr
single-cell-rna-seq
single-cell-sequencing
singlecellexperiment
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Updated
Sep 17, 2024 - R
This repository consists of two **Jupyter Notebooks** created to document a comparison of a mouse brain snATAC-seq (single nuclei assay for transposase accessible chromatin with sequencing) data set from http://catlas.org/mousebrain/ with a scRNA-seq (single cell RNA sequencing) data set from the Linnarsson lab's http://mousebrain.org/. Specific…
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Updated
Jul 8, 2022 - Jupyter Notebook
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