We found that the accommodation of sulfate ions in humidified graphene oxide (GO) walled channels... more We found that the accommodation of sulfate ions in humidified graphene oxide (GO) walled channels results in an optimized proton conductivity, which is higher than the proton conductivity of all other forms of GO.
Autophagy is the major intracellular lysosomal bulk degradation pathway induced by nutrient starv... more Autophagy is the major intracellular lysosomal bulk degradation pathway induced by nutrient starvation and contributes to the elimination of damaged organelles and protein aggregates to recycle building block and is essential for cell survival. Microtubule-associated protein 1 light chain 3 (LC3) plays an indispensable role in macroautophagy formation and is a molecular marker for the process. Here, we show that autophagy increased through quick robust signaling from starvation by enhanced levels of LC3, LC3-EGFP (enhanced green fluorescent protein) punctate, and bulk proteolysis in rat hepatoma H4-II-E cells and fresh rat hepatocytes. After the addition of amino acids to the starvation condition, a similar quick signal appeared by significant reduction of the LC3 ratio and bulk proteolysis. Interestingly, we observed that post-translational modification of LC3 conversion occurred even long before the changes happened in the level of LC3-mRNA (messenger RNA) expression. A similar co...
Macroautophagy, an intracellular bulk degradation process and a typical form of autophagy in euka... more Macroautophagy, an intracellular bulk degradation process and a typical form of autophagy in eukaryotes, is sensitive to physiological regulation, such as the supply and deprivation of nutrients. Microtubule-associated protein 1 light chain 3 (LC3), a mammalian homologue of yeast Atg8, plays a critical role in macroautophagy formation and is considered a suitable marker for this process. In mammalian cells, there is a limitation for biochemical and morphological methods to monitor autophagy within a short period of time. During analysis of the subcellular distribution of LC3, we found that the cytosolic fraction contains not only a precursor form (LC3-I), but also an apparently active form, denoted as LC3-IIs. Both LC3-I and LC3-IIs in the cytosolic fraction, and thus the LC3-IIs/I ratio (designated the cytosolic LC3 ratio), were more responsive to amino acids than monitoring LC3-II or the LC3-II/I ratio in the total homogenate, and remarkably reflected the total proteolytic flux in fresh rat hepatocytes and the cultured H4-II-E cell line. Thus, in addition to representing a sensitive index of macroautophagy, examining the cytosolic LC3 ratio is an easy and quick quantitative method for monitoring the regulation of this process in hepatocytes and H4-II-E cells.
A growing number of evidences indicate a strict causality between the reduction of autophagic fun... more A growing number of evidences indicate a strict causality between the reduction of autophagic functionality and aging. In this context the preservation of a proper autophagic response is of paramount importance to preserve the cellular processes in aging cell. Nutrients availability, especially for amino acids, is the most physiological key regulator of macroautophagy. In mammalian cells the knowledge of the mechanism and the underlying regulation of macroautophagy has been greatly improved in recent years and we focus on the role of nutrients, in particular on their involvement in preventing cellular aging through the modulation of autophagy. This review covers the main features of macroautophagy regulation by nutrients, in particular amino acids as well as glucose and vitamins, and its mechanisms, focusing primarily on the mammalian hepatocyte, which has been extensively utilized to dissect signaling pathways underlying the regulation of macroautophagy.
Biochemical and Biophysical Research Communications, 2014
Autophagy is the intracellular bulk degradation process to eliminate damaged cellular machinery a... more Autophagy is the intracellular bulk degradation process to eliminate damaged cellular machinery and to recycle building blocks, and is crucial for cell survival and cell death. Amino acids modulate autophagy in response to nutrient starvation and oxidative stress. We investigated the relevance of reactive oxygen species (ROS) production on the regulation of autophagy using amino acids, both as a mixture and individually, in rat hepatoma H4-II-E cells. Nutrient starvation elevated ROS production and stimulated autophagy. Treatment with complete (CAA), regulatory (RegAA) and non-regulatory (NonRegAA) amino acid mixtures showed significant suppression of ROS production, whereas only CAA and RegAA exhibited significant suppression of autophagy, suggesting a dissociation of the two responses. The effects of individual amino acids were examined. Leucine from RegAA decreased ROS production and suppressed autophagy. However, methionine and proline from RegAA and arginine, cystine and glutamic acid from NonRegAA suppressed autophagy with an opposite increase in ROS production. Other amino acids from the NonRegAA group showed stimulating effects on ROS production without an autophagic response. Arginine's effect on autophagy suppression was not blocked by rapamycin, indicating an mTOR-independent pathway. Inhibitor studies on arginine-regulated autophagy may indicate the involvement of NO pathway, which is independent from ROS and mTOR pathways.
Biochemical and Biophysical Research Communications, 2010
Autophagy is an intracellular bulk degradation process induced by nutrient starvation, and contri... more Autophagy is an intracellular bulk degradation process induced by nutrient starvation, and contributes to macromolecular turnover and rejuvenation of cellular organelles. We demonstrated that vitamin E was a novel nutritional enhancer of autophagy in freshly isolated rat hepatocytes and rat hepatoma H4-II-E cells. Supplementation of fresh hepatocytes with vitamin E (up to 100 lM) increased proteolysis significantly in the presence or absence of amino acids in a dose-dependent manner. The cytosolic LC3 ratio, a newly established index of autophagic flux, was significantly increased by vitamin E, strongly suggesting that the possible site of action is the LC3 conversion step, an early step in autophagosome formation. A typical antioxidant, a-lipoic acid, exerted autophagy suppression, while H 2 O 2 stimulated autophagy. It is conceivable that autophagy was stimulated by oxidative stress and this stimulation was cancelled by cellular antioxidative effects. However, in our studies, vitamin E could have enhanced autophagy over-stimulation by H 2 O 2 , rather than suppress it. From these results, using a new cytosolic LC3 ratio, vitamin E increases autophagy by accelerating LC3 conversion through a new signaling pathway, emerging as a novel enhancer of autophagy.
We found that the accommodation of sulfate ions in humidified graphene oxide (GO) walled channels... more We found that the accommodation of sulfate ions in humidified graphene oxide (GO) walled channels results in an optimized proton conductivity, which is higher than the proton conductivity of all other forms of GO.
Autophagy is the major intracellular lysosomal bulk degradation pathway induced by nutrient starv... more Autophagy is the major intracellular lysosomal bulk degradation pathway induced by nutrient starvation and contributes to the elimination of damaged organelles and protein aggregates to recycle building block and is essential for cell survival. Microtubule-associated protein 1 light chain 3 (LC3) plays an indispensable role in macroautophagy formation and is a molecular marker for the process. Here, we show that autophagy increased through quick robust signaling from starvation by enhanced levels of LC3, LC3-EGFP (enhanced green fluorescent protein) punctate, and bulk proteolysis in rat hepatoma H4-II-E cells and fresh rat hepatocytes. After the addition of amino acids to the starvation condition, a similar quick signal appeared by significant reduction of the LC3 ratio and bulk proteolysis. Interestingly, we observed that post-translational modification of LC3 conversion occurred even long before the changes happened in the level of LC3-mRNA (messenger RNA) expression. A similar co...
Macroautophagy, an intracellular bulk degradation process and a typical form of autophagy in euka... more Macroautophagy, an intracellular bulk degradation process and a typical form of autophagy in eukaryotes, is sensitive to physiological regulation, such as the supply and deprivation of nutrients. Microtubule-associated protein 1 light chain 3 (LC3), a mammalian homologue of yeast Atg8, plays a critical role in macroautophagy formation and is considered a suitable marker for this process. In mammalian cells, there is a limitation for biochemical and morphological methods to monitor autophagy within a short period of time. During analysis of the subcellular distribution of LC3, we found that the cytosolic fraction contains not only a precursor form (LC3-I), but also an apparently active form, denoted as LC3-IIs. Both LC3-I and LC3-IIs in the cytosolic fraction, and thus the LC3-IIs/I ratio (designated the cytosolic LC3 ratio), were more responsive to amino acids than monitoring LC3-II or the LC3-II/I ratio in the total homogenate, and remarkably reflected the total proteolytic flux in fresh rat hepatocytes and the cultured H4-II-E cell line. Thus, in addition to representing a sensitive index of macroautophagy, examining the cytosolic LC3 ratio is an easy and quick quantitative method for monitoring the regulation of this process in hepatocytes and H4-II-E cells.
A growing number of evidences indicate a strict causality between the reduction of autophagic fun... more A growing number of evidences indicate a strict causality between the reduction of autophagic functionality and aging. In this context the preservation of a proper autophagic response is of paramount importance to preserve the cellular processes in aging cell. Nutrients availability, especially for amino acids, is the most physiological key regulator of macroautophagy. In mammalian cells the knowledge of the mechanism and the underlying regulation of macroautophagy has been greatly improved in recent years and we focus on the role of nutrients, in particular on their involvement in preventing cellular aging through the modulation of autophagy. This review covers the main features of macroautophagy regulation by nutrients, in particular amino acids as well as glucose and vitamins, and its mechanisms, focusing primarily on the mammalian hepatocyte, which has been extensively utilized to dissect signaling pathways underlying the regulation of macroautophagy.
Biochemical and Biophysical Research Communications, 2014
Autophagy is the intracellular bulk degradation process to eliminate damaged cellular machinery a... more Autophagy is the intracellular bulk degradation process to eliminate damaged cellular machinery and to recycle building blocks, and is crucial for cell survival and cell death. Amino acids modulate autophagy in response to nutrient starvation and oxidative stress. We investigated the relevance of reactive oxygen species (ROS) production on the regulation of autophagy using amino acids, both as a mixture and individually, in rat hepatoma H4-II-E cells. Nutrient starvation elevated ROS production and stimulated autophagy. Treatment with complete (CAA), regulatory (RegAA) and non-regulatory (NonRegAA) amino acid mixtures showed significant suppression of ROS production, whereas only CAA and RegAA exhibited significant suppression of autophagy, suggesting a dissociation of the two responses. The effects of individual amino acids were examined. Leucine from RegAA decreased ROS production and suppressed autophagy. However, methionine and proline from RegAA and arginine, cystine and glutamic acid from NonRegAA suppressed autophagy with an opposite increase in ROS production. Other amino acids from the NonRegAA group showed stimulating effects on ROS production without an autophagic response. Arginine's effect on autophagy suppression was not blocked by rapamycin, indicating an mTOR-independent pathway. Inhibitor studies on arginine-regulated autophagy may indicate the involvement of NO pathway, which is independent from ROS and mTOR pathways.
Biochemical and Biophysical Research Communications, 2010
Autophagy is an intracellular bulk degradation process induced by nutrient starvation, and contri... more Autophagy is an intracellular bulk degradation process induced by nutrient starvation, and contributes to macromolecular turnover and rejuvenation of cellular organelles. We demonstrated that vitamin E was a novel nutritional enhancer of autophagy in freshly isolated rat hepatocytes and rat hepatoma H4-II-E cells. Supplementation of fresh hepatocytes with vitamin E (up to 100 lM) increased proteolysis significantly in the presence or absence of amino acids in a dose-dependent manner. The cytosolic LC3 ratio, a newly established index of autophagic flux, was significantly increased by vitamin E, strongly suggesting that the possible site of action is the LC3 conversion step, an early step in autophagosome formation. A typical antioxidant, a-lipoic acid, exerted autophagy suppression, while H 2 O 2 stimulated autophagy. It is conceivable that autophagy was stimulated by oxidative stress and this stimulation was cancelled by cellular antioxidative effects. However, in our studies, vitamin E could have enhanced autophagy over-stimulation by H 2 O 2 , rather than suppress it. From these results, using a new cytosolic LC3 ratio, vitamin E increases autophagy by accelerating LC3 conversion through a new signaling pathway, emerging as a novel enhancer of autophagy.
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Papers by Razaul Karim