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Created An Answer That Has Been Accepted
Awarded 5060 times (see all awards). Earned by the
following contributors:
5 days, 16 hours ago
United States
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
1 week, 1 day ago
United States
Answer: Find exact GRanges match keeping metadata columns
1 week, 3 days ago
UPF, Barcelona, Spain
Answer: Unused arguments error without used arguments in GSVA?
2 weeks ago
The city by the bay
Answer: Csaw normalization strategies - general inquiry
3 weeks, 4 days ago
United States
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
1 month, 1 week ago
United States
Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a
2 months ago
WEHI, Melbourne, Australia
Answer: RSubread output significantly different from bash Subread output
2 months ago
Germany
Answer: RSubread output significantly different from bash Subread output
2 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Crossover design with limma
2 months, 2 weeks ago
United States
Answer: bioconductor packages on bioconda
2 months, 2 weeks ago
United States
Answer: Struggle with the replicates of epic array data
2 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Is it recommended to analyze different tissues together when using edgeR
2 months, 3 weeks ago
United States
Answer: preprocessIllumina error with EPICv2 array
2 months, 3 weeks ago
United States
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
2 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
2 months, 4 weeks ago
WEHI, Melbourne, Australia
Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
3 months, 2 weeks ago
Australia
Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
3 months, 2 weeks ago
United States
Answer: biomaRt rnorvegicus_gene_ensembl not available anymore
3 months, 2 weeks ago
United States
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
3 months, 2 weeks ago
United States
Answer: Samples used for network inference in RegEnrich
3 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Analysis of 2*4 factorial design
3 months, 2 weeks ago
United States
Answer: clusterProfiler enrichGO on only T-cell related GO terms
3 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
3 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Zero intra-block correlation in RRBS analysis using voomLmFit with block
3 months, 3 weeks ago
United States
Answer: DESeq2 - interactions when using factors concatenated into group
3 months, 4 weeks ago
United States
Answer: How to reverse complement some elements of a DNAStringSet
4 months ago
WEHI, Melbourne, Australia
Answer: How to subset voomLmFit (MArrayLM) object?
4 months ago
United States
Answer: Are transformed values from rlog /vst log2 normalized counts?
4 months ago
United States
Answer: How to conduct maSigPro analysis with only one condition?
4 months ago
WEHI, Melbourne, Australia
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
4 months ago
Japan
Answer: Highly DE genes but small count difference within conditions
4 months ago
United States
Answer: Highly DE genes but small count difference within conditions
4 months, 1 week ago
Germany
Answer: How to control batch effect if Group and batch are same?
4 months, 2 weeks ago
United States
Answer: ISO a solution to rank-order introns by transcript
4 months, 2 weeks ago
United States
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
4 months, 2 weeks ago
United States
Answer: Batch adjustment for cohort based RNA seq data
5 months, 1 week ago
United States
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
5 months, 1 week ago
United States
Answer: Should tSNE from biol. replicates look alike?
5 months, 2 weeks ago
United States
Answer: Size factor normalized counts for between sample comparisons - correct?
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