Bioconductor Destiny

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destiny

written 3.5 years ago by ullrich ▴ 20

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destiny

updated 3.5 years ago by Basti ▴ 780 • written 3.5 years ago by chet.seligman • 0

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destiny BiocVersion

updated 3.5 years ago by shepherl 4.1k • written 3.5 years ago by Yiming ▴ 10

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destiny

7.5 years ago dongji5211314 • 0

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destiny software error bug

8.1 years ago mrodriguezorejuela • 0

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destiny

updated 8.6 years ago by philipp.angerer • 0 • written 9.2 years ago by yang.chen • 0

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by James W. MacDonald 67k

It's not the version control in R/Bioconductor though. It's the version of the genome. OP used Ensembl build 113 to align and then noted th…

Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Quang ▴ 10

Also, Michael, when I used SVA in addition, so I have the `design = ~ Date_lysed + SV1 + condition_subset`, do I just set `mat_corrected <-…

Comment: Differential variability modelling with vst() expression by Michael Love 43k

See Gordon's reply below for an implementation you can use directly.

Comment: Differential variability modelling with vst() expression by jtsy6383 • 0

Thanks for the quick and reassuring response Mike! Some follow-ups if I may on the second point. 1) Any comment on the appropriate summary…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by ATpoint ★ 4.6k

Annotation packages have their value. They are a convenient and stable way to make annotations accessible inside R, they are version-contro…

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Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D

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