Academia.edu no longer supports Internet Explorer.
To browse Academia.edu and the wider internet faster and more securely, please take a few seconds to upgrade your browser.
2008, The Journal of chemical …
…
4 pages
1 file
A theory of coherent resonance energy transfer is developed combining the polaron transformation and a time-local quantum master equation formulation, which is valid for arbitrary spectral densities including common modes. The theory contains inhomogeneous terms accounting for nonequilibrium initial preparation effects and elucidates how quantum coherence and nonequilibrium effects manifest themselves in the coherent energy transfer dynamics beyond the weak resonance coupling limit of the Förster and Dexter ͑FD͒ theory. Numerical tests show that quantum coherence can cause significant changes in steady state donor/acceptor populations from those predicted by the FD theory and illustrate delicate cooperation of nonequilibrium and quantum coherence effects on the transient population dynamics.
The Journal of Chemical Physics, 2012
We investigate the Markovian limit of a polaronic quantum master equation for coherent resonance energy transfer proposed recently by Jang et al. [J. Chem. Phys. 129, 101104 (2008)]. An expression for the rate of excitation energy transfer (EET) is derived and shown to exhibit both coherent and incoherent contributions. We then apply this theory to calculated EET rates for model dimer sys- tems, and demonstrate that the small-polaron approach predicts a variety of dynamical behaviors. Notably, the results indicate that the EET dynamical behaviors can be understood by the interplay between noise-assisted EET and dynamical localization, while both are well captured by the polaron theory. Finally, we investigate bath correlation effects on the rate of EET and show that bath corre- lations (or anti-correlations) can either enhance or suppress EET rate depending on the strength of individual system-bath couplings. In summary, we introduce the small-polaron approach as an intu- itive physical framework to consolidate our understanding of EET dynamics in the condensed phase.
J. Chem. Phys.
The small polaron quantum master equation (SPQME) proposed by Jang et al. [J. Chem. Phys. 129, 101104 (2008)] is a promising approach to describe coherent excitation energy transfer dynamics in complex molecular systems. To determine the applicable regime of the SPQME approach, we per- form a comprehensive investigation of its accuracy by comparing its simulated population dynamics with numerically exact quasi-adiabatic path integral calculations. We demonstrate that the SPQME method yields accurate dynamics in a wide parameter range. Furthermore, our results show that the accuracy of polaron theory depends strongly upon the degree of exciton delocalization and timescale of polaron formation. Finally, we propose a simple criterion to assess the applicability of the SPQME theory that ensures the reliability of practical simulations of energy transfer dynamics with SPQME in light-harvesting systems.
2004
We show that the quantum decoherence of Forster resonant energy transfer between two optically active molecules can be described by a spin-boson model. This allows us to give quantitative criteria, in terms of experimentally measurable system parameters, that are necessary for coherent Bloch oscillations of excitons between the chromophores. Experimental tests of our results should be possible with Flourescent Resonant Energy Transfer (FRET) spectroscopy. Although we focus on the case of protein-pigment complexes our results are also relevant to quantum dots and organic molecules in a dielectric medium.
Journal of Molecular Modeling, 2010
We compare four different types of equations of motion for reduced density matrix of a system of molecular excitons interacting with thermodynamic bath. All four equations are of second order in the linear system-bath interaction Hamiltonian, with different approximations applied in their derivation. In particular we compare time-nonlocal equations obtained from so-called Nakajima-Zwanzig identity and the time-local equations resulting from the partial ordering prescription of the cummulant expansion. In each of these equations we alternatively apply secular approximation to decouple population and coherence dynamics from each other. We focus on the dynamics of intraband electronic coherences of the excitonic system which can be traced by coherent two-dimensional spectroscopy. We discuss the applicability of the four relaxation theories to simulations of population and coherence dynamics, and identify features of the two-dimensional coherent spectrum that allow us to distinguish time-nonlocal effects. Response to Reviewers: We thank both referees for their effort in reviewing our manuscript and for some of their incisive comments. On our part, we have made an effort to correct our article accordingly. Below, we provide a detailed list of changes we made in response to the criticism, and explanations of our position, where we have chosen to defend it. We believe that after the revision our manuscript is suitable for publication in the Journal of Molecular Modeling. Sincerely, Tomáš Mančal List of changes and detailed answer to referees: Reviewer #1: Point 1: We added a comparison of our theory with constant rate theories in Section 5.1 and Fig. 6. Point 2: We take this point as a comment on our results. Presentation of the total 2D spectrum has several advantages over presenting their rephasing and non-rephasing parts separately. Only in the total spectrum can be interpreted as an absorption/absorption and absorption/stimulate emission plot. Also, for excitonic systems such as the one we study, diagonal peaks oscillate only in the non-rephasing part. The total spectrum has thus also the advantage of larger number of oscillating spectral features. 3. Following the referee's suggestion to rewrite the paper in a more purposeful manner, we have removed several intermediate formulas and presented only their results, as these can be found in standard textbooks. Overall we have tried to concentrate on the purpose of the paper which is to demonstrate difference between approximations applied to second order relaxation theories. We kept section introducing some level of details of the 2D spectroscopy. We think that details of the theory of non-linear spectroscopic methods might be useful for a reader of the Journal of Molecular Modeling, which has its main readership in different theoretical fields 4. We have tried our best improve our English throughout the manuscript. Reviewer #2: We have numbered the seven points raised by the referee successively. Points 1-3: All sentences were corrected according to the referee's suggestion. Point 4: We agree with the referee that the paragraph he/she mentions is not very clearly written, so we rewrite and shorten it. Point 5: Sentence corrected according to the referee's suggestion. Point 6: We add a citation to Wilkie and Wong, J. Phys. A: Math. Theor. 42 (2009) 015006, where the positivity of time non-local equations are discussed, and an example of positivity breakdown is given. 7. We define the term "coherence transfer" in the Section 3.3. We added a note in the text (second paragraph of section 5.1) which explains our conclusion about the coherence transfer. The presence of non-secular terms causes small oscillations of the populations in Fig. 6. Noname manuscript No.
Atoms, 2018
An overview is given of the molecular quantum electrodynamical (QED) theory of resonance energy transfer (RET). In this quantized radiation field description, RET arises from the exchange of a single virtual photon between excited donor and unexcited acceptor species. Diagrammatic time-dependent perturbation theory is employed to calculate the transfer matrix element, from which the migration rate is obtained via the Fermi golden rule. Rate formulae for oriented and isotropic systems hold for all pair separation distances, R, beyond wave function overlap. The two well-known mechanisms associated with migration of energy, namely the R −6 radiationless transfer rate due to Förster and the R −2 radiative exchange, correspond to near-and far-zone asymptotes of the general result. Discriminatory pair transfer rates are also presented. The influence of an environment is accounted for by invoking the polariton, which mediates exchange and by introducing a complex refractive index to describe local field and screening effects. This macroscopic treatment is compared and contrasted with a microscopic analysis in which the role of a neutral, polarizable and passive third-particle in mediating transfer of energy is considered. Three possible coupling mechanisms arise, each requiring summation over 24 time-ordered diagrams at fourth-order of perturbation theory with the total rate being a sum of two-and various three-body terms.
Chemical Physics, 2011
We derive a many-site version of the non-markovian time-convolutionless polaron master equation [S. Jang et al., J. Chem Phys. 129, 101104 (2008)] to describe electronic excitation dynamics in multichromophoric systems. By treating electronic and vibrational degrees of freedom in a combined frame (polaron frame), this theory is capable of interpolating between weak and strong exciton-phonon coupling and is able to account for initial non-equilibrium bath states and spatially correlated environments. Besides outlining a general expression for the expected value of any electronic system observable in the original frame, we also discuss implications of the markovian and secular approximations highlighting that they need not hold in the untransformed frame despite being strictly satisfied in the polaron frame. The key features of the theory are illustrated using as an example a four-site subsystem of the Fenna-Mathew-Olson light-harvesting complex. For a spectral density including a localised high-energy mode, we show that oscillations of site populations may only be observed when non-equilibrium bath effects are taken into account. Furthermore, we illustrate how this formalism allows us to identify the electronic or vibrational origin of the oscillatory dynamics.
Physical Review A, 2013
We show here that due to non-adiabatic couplings in decaying systems applying the same time-dependent protocol in the forward and reverse direction to the same mixed initial state leads to different final pure states. In particular, in laser driven molecular systems applying a specifically chosen positively chirped laser pulse or an equivalent negatively chirped laser pulse yields entirely different final vibrational states. This phenomenon occurs when the laser frequency and intensity are slowly varied around an exceptional point (EP) in the laser intensity and frequency parameter space where the non-hermitian spectrum of the problem is degenerate. The protocol implies that a positively chirped laser pulse traces a counter-clockwise loop in time in the laser parameters' space whereas a negatively chirped pulse follows the same loop in the clockwise direction. According to this protocol one can choose the final pure state from any initial state. The obtained results imply the intrinsic non-adiabaticity of quantum transport around an EP, and offer a way to observe the EP experimentally in time-dependent quantum systems.
We suggest a method of studying coherence in finite-level systems coupled to the environment and use it for the Hamiltonian that has been used to describe the light-harvesting pigment-protein complex. The method works with the adiabatic states and transforms the Hamiltonian to a form in which the terms responsible for decoherence and population relaxation are separated out. Decoherence is then accounted for nonperturbatively and population relaxation using a Markovian master equation. Almost analytical results can be obtained for the seven-level system, and the calculations are very simple for systems with more levels. We apply the treatment to the seven-level system, and the results are in excellent agreement with the exact numerical results of Nalbach et al. [Nalbach, Braun, and Thorwart, Phys. Rev. E 84, 041926 (2011)]. Our approach is able to account for decoherence and population relaxation separately. It is found that decoherence causes only damping of oscillations and does not lead to transfer to the reaction center. Population relaxation is necessary for efficient transfer to the reaction center, in agreement with earlier findings. Our results show that the transformation to the adiabatic basis followed by a Redfield type of approach leads to results in good agreement with exact simulation.
In this study, we investigate the accuracy of a recently developed coherent modified Redfield theory (CMRT) in simulating excitation energy transfer (EET) dynamics. The CMRT is a secular non-Markovian quantum master equation that is derived by extending the modified Redfield theory to treat coherence dynamics in molecular excitonic systems. Herein, we systematically survey the applicability of the CMRT in a large EET parameter space through the comparisons of the CMRT EET dynamics in a dimer system with the numerically exact results. The results confirm that the CMRT exhibits a broad applicable range and allow us to locate the specific parameter regimes where CMRT fails to provide adequate results. Moreover, we propose an accuracy criterion based on the magnitude of second-order perturbation to characterize the applicability of CMRT and show that the criterion summarizes all the benchmark results and the physics described by CMRT. Finally, we employ the accuracy criterion to quantitatively compare the performance of CMRT to that of a small polaron quantum master equation approach. The comparison demonstrates the complementary nature of these two methods, and as a result, the combination of the two methods provides accurate simulations of EET dynamics for the full parameter space investigated in this study. Our results not only delicately evaluate the applicability of the CMRT but also reveal new physical insights for factors controlling the dynamics of EET that should be useful for developing more accurate and efficient methods for simulations of EET dynamics in molecular aggregate systems.
2002
F\"{o}rster-Dexter theory for excitation energy transfer is generalized for the account of short time nonequilibrium kinetics due to the nonstationary bath relaxation. The final rate expression is presented as a spectral overlap between the time dependent stimulated emission and the stationary absorption profiles, which allows experimental determination of the time dependent rate. For a harmonic oscillator bath model, an explicit rate expression is derived and model calculations are performed in order to examine the dependence of the nonequilibrium kinetics on the excitation-bath coupling strength and the temperature. Relevance of the present theory with recent experimental findings and possible future theoretical directions are discussed.
Iris Publishers LLC, 2018
Journal of sports science & medicine, 2015
IOP Conference Series: Materials Science and Engineering
Studia Historica Nitriensia, 2023, vol. 27, no 2, pp. 323-357, 2023
Our Schools, Our Selves, 2014
Veterinary World, 2024
Revue internationale d'éducation Sèvres, 2022
International Journal of Health Sciences (IJHS), 2022
New Ideas in Psychology, 1997
Universal Journal of Educational Research, 2016
Alexandria Engineering Journal, 2022
Proceedings of the American Mathematical Society, 1996
Pharmaceuticals
Anatolia Antiqua, 2019
International journal of engineering research and technology, 2018
Journal of Educational and Social Research , 2025
Wound Repair and Regeneration, 2004