Earth Syst. Sci. Data, 12, 2423–2445, 2020
https://doi.org/10.5194/essd-12-2423-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
The Eurasian Modern Pollen Database (EMPD), version 2
Basil A. S. Davis1 , Manuel Chevalier1 , Philipp Sommer1 , Vachel A. Carter2 , Walter Finsinger3 ,
Achille Mauri4 , Leanne N. Phelps1 , Marco Zanon5 , Roman Abegglen6 , Christine M. Åkesson7 ,
Francisca Alba-Sánchez8 , R. Scott Anderson9 , Tatiana G. Antipina10 , Juliana R. Atanassova11 ,
Ruth Beer6 , Nina I. Belyanina12 , Tatiana A. Blyakharchuk13 , Olga K. Borisova14 , Elissaveta Bozilova15 ,
Galina Bukreeva16 , M. Jane Bunting17 , Eleonora Clò18 , Daniele Colombaroli19 ,
Nathalie Combourieu-Nebout20 , Stéphanie Desprat21 , Federico Di Rita22 , Morteza Djamali23 ,
Kevin J. Edwards24 , Patricia L. Fall25 , Angelica Feurdean26 , William Fletcher27 , Assunta Florenzano18 ,
Giulia Furlanetto28 , Emna Gaceur29 , Arsenii T. Galimov10 , Mariusz Gałka30 , Iria García-Moreiras31 ,
Thomas Giesecke32 , Roxana Grindean33 , Maria A. Guido34 , Irina G. Gvozdeva35 , Ulrike Herzschuh36 ,
Kari L. Hjelle37 , Sergey Ivanov38 , Susanne Jahns39 , Vlasta Jankovska40 , Gonzalo Jiménez-Moreno41 ,
Monika Karpińska-Kołaczek42 , Ikuko Kitaba43 , Piotr Kołaczek42 , Elena G. Lapteva44 ,
Małgorzata Latałowa45 , Vincent Lebreton46 , Suzanne Leroy47 , Michelle Leydet48 , Darya A. Lopatina49 ,
José Antonio López-Sáez50 , André F. Lotter6 , Donatella Magri22 , Elena Marinova51 , Isabelle Matthias52 ,
Anastasia Mavridou53 , Anna Maria Mercuri18 , Jose Manuel Mesa-Fernández41 , Yuri A. Mikishin35 ,
Krystyna Milecka42 , Carlo Montanari54 , César Morales-Molino6 , Almut Mrotzek55 ,
Castor Muñoz Sobrino31 , Olga D. Naidina56 , Takeshi Nakagawa43 , Anne Birgitte Nielsen57 ,
Elena Y. Novenko58 , Sampson Panajiotidis53 , Nata K. Panova10 , Maria Papadopoulou53 ,
Heather S. Pardoe59 , Anna P˛edziszewska45 , Tatiana I. Petrenko35 , María J. Ramos-Román60 ,
Cesare Ravazzi28 , Manfred Rösch61 , Natalia Ryabogina38 , Silvia Sabariego Ruiz62 , J. Sakari Salonen60 ,
Tatyana V. Sapelko63 , James E. Schofield24 , Heikki Seppä60 , Lyudmila Shumilovskikh64 ,
Normunds Stivrins65 , Philipp Stojakowits66 , Helena Svobodova Svitavska67 ,
Joanna Świ˛eta-Musznicka45 , Ioan Tantau33 , Willy Tinner6 , Kazimierz Tobolski42, , Spassimir Tonkov15 ,
Margarita Tsakiridou53 , Verushka Valsecchi6 , Oksana G. Zanina68 , and Marcelina Zimny45
1 Institute
of Earth Surface Dynamics IDYST, Faculté des Géosciences et l’Environnement, University of
Lausanne, Batiment Géopolis, 1015, Lausanne, Switzerland
2 Department of Botany, Charles University, Benatska 2, Prague 2 128-01, Czech Republic
3 ISEM, CNRS, University of Montpellier, EPHE, IRD, Montpellier, France
4 European Commission Joint Research Centre, Directorate D – Sustainable Resources – Bio-Economy Unit,
Via E. Fermi 2749, 21027 Ispra (VA), Italy
5 Institute of Pre- and Protohistoric Archaeology, Kiel University,
Johanna-Mestorf-Str. 2–6, 24118 Kiel, Germany
6 Institute of Plant Sciences, University of Bern, Altenbergrain 21, Bern, Switzerland
7 Department of Geography and Sustainable Development, University of St Andrews, North Street, St Andrews,
KY16 9AL, UK
8 Department of Botany, University of Granada, Avda. Fuente Nueva, 18071-Granada, Spain
9 School of Earth and Sustainability, 624 S. Knoles St., Ashust Building, Room A108, Flagstaff, AZ, USA
10 Botanical Garden of the Ural Branch of the Russian Academy of Sciences, 620144, Yekaterinburg, Russia
11 Biological Faculty, Department of Botany, Sofia University, 8 Dragan Tzankov bld., 1164 Sofia, Bulgaria
12 Pacific Institute of Geography FEB RAS, 7, Radio Street, 690042, Vladivostok, Russia
13 Institute of Monitoring of Climatic and Ecological Systems of Siberian Branch of Russian Academy of
Sciences, Akademicheski ave. 10/3, 634055, Tomsk, Russia
14 Russian Academy of Sciences, Institute of Geography, Staromonetny lane 29, 119017, Moscow, Russia
15 Faculty of Biology, Laboratory of Palynology, Sofia University, 8 Dragan Tsankov blvd., 1164 Sofia, Bulgaria
Published by Copernicus Publications.
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B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
16 Siberian
Branch of the Russian Academy of Sciences, c/o N. Ryabogina, Tyumen Scientific Centre SB RAS,
Malygina st. 86, 625026, Tyumen, Russia
17 Department of Geography, Geology and Environment, University of Hull,
Cottongham Road, Hull, HU67RX, UK
18 Laboratorio di Palinologia e Paleobotanica – Dipartimento Scienze della Vita,
Università di Modena e Reggio Emilia, via Campi 287, 41125 Modena, Italy
19 Department of Geography, Royal Holloway University of London, Egham, Surrey TW20 0EX, UK
20 UMR 7194 – CNRS/MNHN, Dpt Homme et Environnement, Institut de Paléontologie Humaine 1,
rue René Panhard, 75013 Paris, France
21 University of Bordeaux, EPOC UMR 5805, EPHE- PSL University,
Allée Geoffroy St Hilaire, 33615 Pessac, France
22 Department of Environmental Biology, Sapienza University, Piazzale Aldo Moro, 5, Rome, Italy
23 Institut Méditerranéen de Biodiversité et d’Ecologie, Aix-Marseille Université – Campus Aix Technopôle de
l’environnement Arbois Méditerranée Avenue Louis Philibert Bât Villemin – BP 80,
13545 Aix-en-Provence CEDEX 4, France
24 Departments of Geography and Environment and Archaeology, School of Geosciences,
University of Aberdeen, Elphinstone Road, Aberdeen AB24 3UF, UK
25 Department of Geography & Earth Sciences, University of North Carolina, Charlotte, NC, USA
26 Department of Physical Geography, Goethe University, Altenhöferallee 1,
60438 Frankfurt am Main, Germany
27 Quaternary Environments and Geoarchaeology Group, Department of Geography, School of Environment,
Education and Development, University of Manchester, Oxford Road, Manchester, M13 9PL, UK
28 CNR-IGAG, Laboratory of Palynology and Palaeoecology, Piazza della Scienza 1, 20126 Milan, Italy
29 GEOGLOB, Faculty of Sciences of Sfax, Route Soukra, BP. 802, 3038 Sfax, Tunisia
30 Faculty of Biology and Environmental Protection, Department of Geobotany and Plant Ecology,
University of Łódź, Banacha Str. 12/16, 90-237 Łódź, Poland
31 Dpto. Bioloxía Vexetal e Ciencias do Solo, Facultade de Ciencias, Universidade de Vigo, 36310, Vigo, Spain
32 Department of Physical Geography, Faculty Geoscience, Utrecht University, P.O. Box 80115,
3508 TC, Utrecht, the Netherlands
33 Department of Geology, Babes-Bolyai University, Kogalniceanu Street, 400084, Cluj-Napoca, Romania
34 CIR-LASA – University of Genoa, Via Balbi, 6, 16126, Genoa, Italy, Italy
35 Far East Geological Institute FEB RAS, 159, Prospekt 100-letiya, 690022, Vladivostok, Russia
36 Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research,
Telegraphenberg A45, Potsdam, Germany
37 Department of Natural History, University Museum, University of Bergen,
P.O. Box 7800, 5020 Bergen, Norway
38 Tyumen Scientific Centre SB RAS, Malygina st. 86, 625026, Tyumen, Russia
39 Brandenburgisches Landesamt für Denkmalpflege, Wünsdorfer Platz 4–5,
15806 Zossen OT Wünsdorf, Germany
40 Paleoecological Laboratory, Institute of Botany, Academy of the Sciences of the Czech Republic,
Lidická 25/27, 602 00 BRNO, Czech Republic
41 Departamento de Estratigrafía y Paleontología, Universidad de Granada,
Avda. Fuentenueva S/N, 18002 Granada, Spain
42 Laboratory of Wetland Ecology and Monitoring, Adam Mickiewicz University,
B. Krygowskiego 10/247, 61-680 Poznań, Poland
43 Research Centre for Palaeoclimatology, Ritsumeikan University, 1-1-1 Noji-Higashi,
Kusatsu, Shiga 525-8577, Japan
44 Laboratory of Paleoecology, Institute of Plant and Animal Ecology of the Ural Branch of the Russian
Academy of Sciences, 8 Matra str., 202, 620144, Yekaterinburg, Russia
45 Department of Plant Ecology, Laboratory of Palaeoecology & Archaeobotanyul, University of Gdańsk, Wita
Stwosza 59, 80-308 Gdańsk, Poland
46 CNRS/Muséum National d’Histoire Naturelle, UMR 7194 – Institut de Paléontologie Humaine 1,
rue René Panhard, 75013 Paris, France
47 AMU-LAMPEA, Aix Marseille Univ, CNRS, Minist Culture, LAMPEA, UMR 7269, 5 rue du Château de
l’Horloge, 13094, Aix-en-Provence, France
Earth Syst. Sci. Data, 12, 2423–2445, 2020
https://doi.org/10.5194/essd-12-2423-2020
B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
2425
48 Aix
Marseille Univ, Avignon Université, CNRS, IRD, IMBE, Europôle Arbois, Aix-en-Provence, France
of Stratigraphy and Paleogeography of oceans Geological Institute Russian Academy of Sciences,
Pyzevskii per., 119017, Moscow, Russia
50 Instituto de Historia-CSIC, Albasanz 26–28, 28037 Madrid, Spain
51 State Office for Cultural Heritage Baden Württemberg, Laboratory for Archaeobotany,
Fischersteig 9, 78343 Hemmenhofen, Germany
52 Campus Institute Data Science, Göttingen, Germany
53 Laboratory of Forest Botany-Geobotany, Faculty of Forestry and Natural Environment, Aristotle University
of Thessaloniki, Thessaloniki, Greece
54 University of Genoa, DISTAV – Corso Europa, 26, Genoa, Italy
55 Institute of Botany and Landscape Ecology, University of Greifswald,
Soldmannstr. 15, 17487 Greifswald, Germany
56 Geological Institute RAS, Pyzhevsky 7, 119017, Moscow, Russia
57 Lund University, Sölvegatan 12, 66362 Lund, Sweden
58 Faculty of geography, Department of Physical Geography and Landscape Science, Lomonosov Moscow State
University, Leninskiye gory, 1., 119991, Moscow, Russia
59 National Museum Wales, Cathays Park, Cardiff CF10 3NP, UK
60 Department of Geosciences and Geography, University of Helsinki, P.O. Box 64 (Gustaf Hällströmin katu 2),
F00014, Helsinki, Finland
61 Department of Philosophy, Universität Heidelberg, Sandgasse 7, 69117 Heidelberg, Germany
62 Dept. de Biodiversidad, Ecología y Evolución, Universidad Complutense de Madrid,
Ciudad Universitaria 28040, Madrid, Spain
63 Institute of Limnology, RAS, 9, Sevastyanova st., 196105, St. Petersburg, Russia
64 Department of Palynology and Climate Dynamics, University of Göttingen, Wilhelm-Weber-Str. 2a, 37073
Göttingen, Germany
65 Department of Geography, University of Latvia, Jelgavas str. 1, 1004, Riga, Latvia
66 Institute of Geography, University of Augsburg, Alter Postweg 118, 86159 Augsburg, Germany
67 Institute of Botany, Czech Academy of Sciences, Zámek 1, 252 43 Pruhonice, Czech Republic
68 RAS, Laboratory of Soil Cryology, Institute of Physico-Chemical and Biological Problems in Soil Science,
Moscow region, Institutskaya 2, 142290, Pushchino, Russia
deceased
49 Laboratory
Correspondence: Basil A. S. Davis (basil.davis@unil.ch)
Received: 21 January 2020 – Discussion started: 24 February 2020
Revised: 15 May 2020 – Accepted: 7 August 2020 – Published: 9 October 2020
Abstract. The Eurasian (née European) Modern Pollen Database (EMPD) was established in 2013 to provide
a public database of high-quality modern pollen surface samples to help support studies of past climate, land
cover, and land use using fossil pollen. The EMPD is part of, and complementary to, the European Pollen
Database (EPD) which contains data on fossil pollen found in Late Quaternary sedimentary archives throughout
the Eurasian region. The EPD is in turn part of the rapidly growing Neotoma database, which is now the primary
home for global palaeoecological data. This paper describes version 2 of the EMPD in which the number of
samples held in the database has been increased by 60 % from 4826 to 8134. Much of the improvement in
data coverage has come from northern Asia, and the database has consequently been renamed the Eurasian
Modern Pollen Database to reflect this geographical enlargement. The EMPD can be viewed online using a
dedicated map-based viewer at https://empd2.github.io and downloaded in a variety of file formats at https:
//doi.pangaea.de/10.1594/PANGAEA.909130 (Chevalier et al., 2019).
https://doi.org/10.5194/essd-12-2423-2020
Earth Syst. Sci. Data, 12, 2423–2445, 2020
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1
B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
Introduction
Modern pollen samples provide an essential source of information for interpreting and understanding the fossil pollen
record, which in turn provides one of the most important spatially resolved sources of information on Quaternary vegetation and climate. We use the term “fossil pollen” here as it
is commonly used in the Quaternary sciences. The fossils in
this sense can more accurately be described as sub-fossils
since they have usually only undergone limited (if any) postdeposition mineralisation, while pollen is taken to include
many spores as well as the pollen from flowering plants.
Fossil pollen can be found preserved in sediments in lakes
and bogs and other anaerobic environments throughout the
Eurasian region extending back throughout the Quaternary.
Modern pollen is simply the component of that fossil record
found in the last 100–150 years, most often in the surface layers of lake and bog sediments, but also including comparable
collectors of pollen such as moss polsters.
Davis et al. (2013) include a comprehensive introduction
to the different scientific uses of modern pollen samples.
Modern pollen samples have been used to interpret many different environmental processes, such as past changes in land
cover, land use, and human impact; the impact on vegetation
of past edaphic and hydroseral changes; and the effects of
past changes in fire, pests, and disease on vegetation. Modern
samples have also been used to understand taphonomic problems with regard to pollen transport, deposition, and preservation. One of the early motivations for establishing large
modern pollen datasets and one that still remains important
is their use as calibration “training sets” for the quantitative
reconstruction of past climate. This approach has also more
recently been adapted to quantitative reconstructions of land
cover, where a similar modelling approach to climate reconstruction is applied to determine, for instance, forest cover.
Similarly, modern samples have also been used to establish
and model the relationship between vegetation and pollen assemblages based on the different pollen productivity of different taxa and thereby provide quantitative estimates of past
vegetation composition in a landscape from records of fossil
pollen.
Historically, modern pollen data were often gathered directly for a particular research project, but the data were
rarely shared and if published often in grey literature such
as a thesis, report, or monograph. Efforts to develop larger
datasets at continental scales were pioneered in the 1990s,
primarily by research groups looking to use these datasets as
calibration datasets for quantitative climate reconstruction.
Development however was haphazard, and the datasets had
a reputation for being poorly documented and quality controlled, often containing duplicates, digitised data (not original raw counts), uncertain taxonomic standardisation, poor
geolocation information, and loose definitions of “modern”
that could embrace as much as the last 500 years. It became increasingly clear that a quality controlled and stanEarth Syst. Sci. Data, 12, 2423–2445, 2020
dardised database of modern pollen samples was required,
comparable to the European Pollen Database (EPD) for fossil pollen samples and reflecting the same open-access and
community-based principles.
The Eurasian (née European) Modern Pollen Database
(EMPD) was therefore established in 2013 as a complement
to the European Pollen Database (EPD) for fossil pollen
(Davis et al., 2013). The first version of the EMPD (referenced herein as the EMPD1) contained almost 5000 samples,
submitted by over 40 individuals and research groups from
all over Europe. Over the last 6 years more data have continued to be submitted, and additional efforts have been made
to incorporate more data held in open data repositories such
as PANGAEA and made available as a supplement in published studies. This paper documents the first update to the
EMPD (referenced herein as EMPD2), in which the number
of samples stored in the database has increased by around
60 %.
The EMPD remains the only open-access database of
modern pollen samples covering the Eurasian continent.
Smaller compilations of modern pollen samples exist for
some regions, but these generally have limitations in terms
of some or all of the following: (1) the extent of metadata provided, (2) the completeness of the taxa assemblage,
(3) the standardisation of taxa nomenclature and hierarchy
with respect to the EPD, (4) the inclusion of digitised rather
than original raw count data, (5) the inclusion of percentages rather than raw counts, (6) information about the original source of the data and the analyst, and in some cases,
(7) limitations to public access. Importantly, all of these aspects limit their compatibility with the EPD, where compatibility with the EPD is one of the primary objectives of the
EMPD. The EMPD contains only the original raw count data
(no percentage data) for the complete pollen assemblage. The
EMPD also contains comprehensive and standardised metadata about the pollen sample location, the landscape and vegetation environment from which it was collected, the way it
was collected, the year that it was collected, and who collected and analysed the sample and where it was published.
The EMPD has no formal spatial domain, but in general
it covers the same geographic region as the EPD. This has
traditionally been the Palearctic vegetation region of Eurasia
excluding China, which has established its own semi-private
regional database. As well as the terrestrial Eurasian landmass and associated islands, it also includes marine samples
from coastal margins and enclosed seas. Increasingly however these geographical administrative boundaries have become blurred as regional pollen databases become integrated
into the global Neotoma Palaeoecology Database (Williams
et al., 2018), hereafter referred to as “Neotoma”. While regional databases such as the EPD will outwardly retain their
identity within Neotoma, internally the data will be completely integrated at a global level. It is also planned that the
EMPD will become integrated into Neotoma in the near future, and with this in mind, the EMPD2 also includes data
https://doi.org/10.5194/essd-12-2423-2020
B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
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Table 1. List of metadata fields used in the EMPD.
Sample name
Sigle
Site name
Country
Longitude
Latitude
Elevation
Location
Location notes
Area of site
Sample context
Site description
Vegetation
Sample type
Sample method
Age BP
Age uncertainty
Notes
Publications 1–4
Worker role
Worker details
Original authors’ sample name
EMPD unique sample identifier
Original authors’ site name
Country where the site is located
Longitude in decimal degrees
Latitude in decimal degrees
Elevation in metres above sea level
Reliability estimate of the accuracy of the geolocation information
Notes about the site location
Site size in hectares
Physical environment of the site
Notes about the physical context of the site
Description notes about the surrounding vegetation
The type of material or sediment sampled
The method used to obtain the pollen sample
The age of the sample BP
The age uncertainty associated with the sample
General notes concerning the sample and site
Any publications associated with the sample
The name of the responsible person or analyst
Address and contact details for this person
from outside of the traditional EPD region on the basis that it
represented the most expeditious route to making these data
publicly available within Neotoma. Consequently, this second version of the EMPD includes not only data from Europe and northern Asia, but also data from Greenland, India,
China, and North Africa.
2
Methods
Details about the structure and metadata of the database have
already been described in detail by Davis et al. (2013). The
list of metadata fields is shown in Table 1. We also include
climate and vegetation data for each sample location. The
climate data include mean monthly, seasonal, and annual
temperature and precipitation climatology from WorldClim2
(Fick and Hijmans, 2017). The climate was assigned according to the nearest grid point within the 30 s (approximately
1 km2 ) resolution of the WorldClim2 grid. The vegetation
data include realm, biome, and ecoregion, taken from Olson et al. (2001). Note that all samples have been assigned
a biome, including marine samples. The biome assigned to
marine samples was based on the nearest point of land to the
sample. No climate has been assigned to marine samples.
The protocol for the database follows that of the European
Pollen Database, with some additions. The EMPD only includes samples younger than 200 BP, and with a sampling
resolution comparable with the fossil pollen in the EPD. For
instance, the EMPD does not include pollen trap data gathered at monthly or annual resolution, but it does accept trap
data averaged over a period of at least 10 years, which is
https://doi.org/10.5194/essd-12-2423-2020
Free text
Assigned
Free text
List
Numeric
Numeric
Numeric
List
Free text
Numeric
List
Free text
Free text
List
List
Numeric
List
Free text
Free text
Free text
Free text
more comparable with the time typically represented in a fossil pollen sample taken from a sediment core.
Like the EPD, the EMPD only includes raw count data
representing the full pollen assemblage, and it does not contain percentage data or truncated or summary assemblages.
Percentages are excluded because their calculation can vary
from author to author, and therefore unlike raw count data it
is not always possible to directly compare different samples
from different sources with percentage data. This is an important data quality criteria, but it has led to the exclusion of
some large regional modern pollen datasets that have been
recently published. This is discussed in the next section.
Modern pollen samples have been gathered from a variety
of depositional environments, and the type of environment is
recorded for 75 % of the samples in the database. The most
common environments are moss polsters (31 %), soil (21 %),
and lake sediments (19 %).
2.1
Data sources
The pollen data for the latest update of the EMPD have
come from a diverse range of sources, but mainly submissions from individual researchers and research groups. Most
of this has been the result of published research (Table 2),
but we also include unpublished data. Additional pollen data
have come from open-access sources such as the PANGAEA
data archive and data supplements to publications, as well as
new fossil pollen data submitted to the EPD and Neotoma
since EMPD1 where the sample age of a sediment core top
fulfils the requirements of a modern pollen sample.
Earth Syst. Sci. Data, 12, 2423–2445, 2020
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B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
Table 2. List of data submitted to the EMPD2 by country.
Sample(s)
Country
Contributor(s)
Publication(s)
3
Belarus
Binney, H.
Binney et al. (2016, 2017)
41
Bulgaria
Atanassova, J., Lazarova, M., Tonkov,
S.
Atanassova (2007); Lazarova et al. (2006)
33
China, People’s
Republic of
Binney, H.
Binney et al. (2016, 2017)
56
Cyprus
Fall, P.
Fall (2012)
47
Czech Republic
Svobodova Svitavska, H.
Helena (2004); Pardoe et al. (2010); Svobodová (1989,
1997, 2002); Svobodová et al. (2001)
1
Finland
Stivrins, N.
Stivrins et al. (2017b)
4
France
Leroy, S.
4
Georgia
Binney, H.
Binney et al. (2016, 2017)
85
Germany
Giesecke, T., Matthias, I., Mrotzek, A.,
Rösch, M., Stojakowits, P.
Lechterbeck (2001); Matthias et al. (2012, 2015);
Mrotzek et al. (2017); Rösch et al. (2017); Rösch (2009,
2012, 2013, 2018); Rösch and Lechterbeck (2016);
Rösch and Tserendorj (2011a, b); Rösch and Wick
(2019); Stojakowits (2015)
76
Greece
Jahns, S., López Sáez, J., Mavridou,
A., Panajiotidis, S., Papadopoulou, M.,
Tsakiridou, M.
Glais et al. (2016); Jahns (1992); Pardoe et al. (2010)
64
Greenland
Edwards, K., Schofield, J.
Schofield et al. (2007)
4
Iceland
Hallsdottir, M., Stivrins, N.
16
India
Demske, D., Tarasov, P.
Leipe et al. (2014)
64
Iran, Islamic
Republic of
Djamali, M., Leroy, S., Ramezani, E.
Djamali et al. (2009); Haghani et al. (2016); Leroy et al.
(2011, 2018); Ramezani et al. (2013)
243
Italy
Accorsi, C., Badino, F., Champvillair,
E., Clò, E., Colombaroli, D., Di Rita, F.,
Finsinger, W., Florenzano, A., Furlanetto, G., Greggio, B., Joannin, S., Leroy,
S., Lotter, A., Magri, D., Mercuri, A.,
Montanari, C., Rattighieri, E., Ravazzi,
C., Suanno, C., Tinner, W., Valsecchi,
V.
Abbate, 1981; Finsinger et al. (2007, 2010); Florenzano
et al. (2017); Florenzano and Mercuri (2018); Furlanetto et al. (2019); Guido et al., 1992; Joannin et al.
(2012); Margaritelli et al. (2016); Mercuri et al. (2012);
Montali et al. (2006); Montanari and Guido (1994); Rattighieri et al. (2010) (2012); Di Rita et al. (2011, 2018a,
b); Di Rita and Magri (2009)
84
Japan
Kitaba, I., Leipe, C., Nakagawa, T.,
Watanabe, M.
Leipe et al. (2018)
5
Kazakhstan
Duryagina, N., Naidina, O.,
Nepomilueva, N.
Naidina and Richards (2018);
Nepomilueva and Duryagin (1990)
43
Kyrgyzstan
Beer, R., Morales-Molino, C., Tinner,
W.
Beer et al. (2007)
10
Latvia
Stivrins, N.
Feurdean et al. (2017); Grudzinska et al. (2017);
Stivrins et al. (2014, 2015a, b, 2016b, a, 2017a); Veski
et al. (2012)
120
Morocco
Alba-Sánchez, F., Fletcher, W.,
Sabariego Ruiz, S.
Bell and Fletcher (2016)
Earth Syst. Sci. Data, 12, 2423–2445, 2020
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B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
2429
Table 2. Continued.
Sample(s)
Country
Contributor(s)
Publication(s)
231
Norway
Hjelle, K., Pardoe, H.
Caseldine and Pardoe (1994); Hjelle et al. (2015);
Hjelle and Sugita (2012); Mehl and Hjelle (2016); Pardoe, (1992, 2001, 2006, 2014)
115
Poland
Gałka, M., Karpińska-Kołaczek, M.,
Kołaczek, P., Latałowa, M., Milecka,
K., P˛edziszewska, A., Tobolski, K.,
Zimny, M., Świ˛eta-Musznicka, J.
Gałka et al. (2014, 2017); Milecka et al. (2017); Pardoe
et al. (2010); P˛edziszewska (2008); P˛edziszewska et al.
(2015); P˛edziszewska and Latałowa (2016); Pidek et al.
(2010)
12
Portugal
Fletcher, W.
Fletcher (2005)
17
Romania
Feurdean, A., Grindean, R., Tantau, I.
Fărcaş and Tanţău (2012); Feurdean et al. (2009, 2013,
2015); Feurdean and Willis (2008a, b); Grindean et al.
(2014, 2015); Tanţău et al. (2014a, b, 2009, 2011)
1883
Russian
Federation
Antipina, T., Aseev, N., Belyanina,
N., Binney, H., Blyakharchuk, T.,
Borisova, O., Bukreeva, G., Duryagin,
D., Duryagina, N., Dyuzhova (Krasnorutskaya), K., Erokhin, N., Feurdean, A., Galimov, A., Golubeva, Y.,
Gvozdeva, I., Herzschuh, U., Ivanov, S.,
Karaulova, L., Khaymusova, N., Khizhnyak, N., Kremenetsky, N., Lapteva, E.,
Lopatina, D., Makovsky, N., Makovsky,
V., Marchenko-Vagapova, T., Marieva,
N., Matishov, G., Mikishin, Y., Müller,
S., Naidina, O., Nepomilueva, N.,
Niemeyer, B., Nikiforova, L., Nosevich,
E., Nosova, M., Novenko, E., Panova,
N., Panova, N., Petrenko, T., Pisareva, V., Pisareva, N., Plotnikova, N.,
Ryabogina, N., Salonen, J., Sapelko, T.,
Semochkina, T., Seppä, H., Severova,
E., Stivrins, N., Surova, N., Troitskiy,
N., Vlasta Jankovska, N., Volkova, O.,
Yankovska, N., Zanina, O., Zelikson,
E., Zhuykova, I.
Antipina et al. (2014, 2016); Aseev, 1959; Binney et
al. (2016, 2017); Blyakharchuk et al. (2007, 2019);
Blyakharchuk and Chernova (2013); Borisova et al.
(2011); Bukreeva et al., 1986; Duguay et al. (2012);
Hijmans et al. (2005); Ivanov and Ryabogina (2004);
Klemm et al. (2013, 2016); Kosintsev et al. (2010);
Lapteva (2009); Lapteva et al. (2013); Lapteva (2013);
Lapteva et al. (2017); Lapteva and Korona (2012);
Larin and Ryabogina (2006); Lopatina and Zanina
(2016); Lychagina et al. (2013); Makovsky and Panova,
1978; Matishov et al. (2011); Matveev et al., 1997;
Matveeva et al. (2003); Mikishin and Gvozdeva (2009,
2012); Müller et al. (2010); Naidina and Richards
(2018); Nepomilueva and Duryagin, 1990; Niemeyer
et al. (2017); Nikiforova (1978); Novenko et al.
(2011, 2014, 2017); Panova, 1981; Panova et al.,
(1996, 2010, 2008); Panova and Korotkovskaya (1990);
Panova and Makowski (1979); Petrenko et al. (2009);
Poshekhonova et al. (2008); Ryabogina and Orlova
(2002); Salonen et al. (2011, 2012); Sapelko and Nosevich (2013); Shavnin et al. (2006); Stivrins et al.
(2017b); Surova and Troitsky, 1971; Zakh (1997)
134
Spain
Alba-Sánchez, F., Anderson, R.,
García-Moreiras, I., Jiménez-Moreno,
G., Leroy, S., López-Sáez, J.A., MesaFernández, J., Morales-Molino, C.,
Muñoz Sobrino, C., Ramos-Román,
M., Sabariego Ruiz, S.
Anderson et al. (2011); García-Moreiras et al. (2015);
Jiménez-Moreno et al. (2013); Jiménez-Moreno and
Anderson (2012); Leroy, 1990; Mesa-Fernández et al.
(2018); Morales-Molino et al. (2017a, b, 2018, 2011,
2013); Morales-Molino and García-Antón (2014);
Muñoz Sobrino et al. (2014); Ramos-Román et al.
(2016,2018)
4
Sweden
Nielsen, A., Åkesson, C.
Åkesson et al. (2015); Ning et al. (2018)
29
Tunisia
Desprat, S., Gaceur, E.
Gaceur et al. (2017)
31
Turkey
Shumilovskikh, L.
2
Ukraine
Binney, H., Borisova, O.
18
United
Kingdom
Bunting, M.
https://doi.org/10.5194/essd-12-2423-2020
Binney et al. (2016, 2017)
Earth Syst. Sci. Data, 12, 2423–2445, 2020
2430
B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
Some large independent surface sample datasets covering
the Eurasian region have been published and made available
since EMPD1, most notably Binney et al. (2017), Marinova
et al. (2018), and Herzschuh et al. (2019). Both Binney et
al. (2017) and Marinova et al. (2018) already include a large
amount of data from the EPD and EMPD1, but also data
that have not been publicly released before. This includes
“heritage” data from earlier studies such as the Biome6000
project Prentice and Webb, 1998) and PAIN project (Bigelow
et al., 2003). These heritage data are mostly composed of percentages, at least some (unknown part) of which have been
digitised, and whose origins, selection criteria, and context
are rarely documented. Another problem with these heritage
data apart from the limited metadata is the loose definition of
a “modern sample” in these early projects, being defined in
both PAIN and Biome6000 as anything younger than 500 BP.
Unfortunately, the age criteria for selecting individual samples were not recorded when the datasets were compiled.
These problems also extend to the recent release of data
by Herzschuh et al. (2019) from China and Mongolia. These
data represent most of the modern pollen data held in the
Chinese Pollen Database (CPD) (Ni et al., 2010; Zheng et
al., 2014). The Herzschuh et al. (2019) dataset includes 2559
modern pollen samples and is of major importance as the
first significant amount of publicly available data from this
region. However, the data are only provided as percentages
based on a summary of the taxa from each sample and also
include digitised data. We were therefore unable to include it
in the EMPD2. The Herzschuh et al. (2019) data are available
from PANGAEA, along with the Tarasov et al. (2011) dataset
of 798 samples mainly from Japan and eastern Russia, which
are also provided as percentages for a limited selection of
taxa. We hope that the raw count data for the full assemblage
will be made available in the near future.
Other regional pollen databases that overlap with the
EMPD include the Indian Pollen Database (IPD) and the
African Pollen Database (APD). The IPD is still under development and is not publicly accessible, but it includes both
fossil and modern pollen samples from the Indian subcontinent (Krishnamurthy and Gaillard, 2011). The EMPD also
includes samples from North Africa, which overlaps with
the APD (Vincens et al., 2007). Fossil pollen data from the
APD are available as individual files and as a partially complete paradox database from the APD website (Table 3), but
the status of the modern pollen data held within the APD
(Gajewski et al., 2002) remains somewhat unclear, since
these data have not been made publicly available. At present
the APD is being integrated into Neotoma, and it is hoped
that once this is completed the modern pollen data from
Africa will become more freely available.
2.2
Data processing
As with the EMPD1, the data submitted to the EMPD2 have
come in a wide variety of data formats and with varying levEarth Syst. Sci. Data, 12, 2423–2445, 2020
Table 3. Web addresses for pollen databases mentioned in the text.
Last access of all URLs: 20 January 2020.
Eurasian Modern Pollen Database (EMPD)
Viewer:
Data link:
https://empd2.github.io/?branch=master
https://epdweblog.org/
european-modern-pollen-database/
European Pollen Database (EPD)
Viewer:
Data link:
http://www.europeanpollendatabase.net/
fpd-epd/bibli.do
https://epdweblog.org/epd_data/
Neotoma Paleoecology Database (NEOTOMA)
Viewer:
Data link:
https://apps.neotomadb.org/explorer/
https://www.neotomadb.org/data
African Pollen Database (APD)
Viewer:
Data link:
http://fpd.sedoo.fr/fpd/bibli.do
http://fpd.sedoo.fr/fpd/english.do
Pangaea Data Archive (PANGAEA)
Viewer:
Data link:
https://www.pangaea.de
https://doi.pangaea.de/10.1594/PANGAEA.
909130
els of metadata. All of these files had to be processed and a
variety of quality control checks made before entry into the
database (see also Davis et al., 2013).
Figure 1 shows the steps taken in processing and qualitycontrolling the data. On receipt from the contributor, the data
were entered into one of two standardised file formats according to whether they were pollen data or the associated
metadata. Each of the two different types of data was then
subject to a series of quality control checks to make sure they
did not contain errors and that they conformed to data protocols. For instance, values in numerical fields in the metadata
(shown in Table 1) had to fall within realistic boundaries expected for that field, such as for latitude, longitude, and altitude. Also, it had to be checked that controlled fields based
on selection from a list of acceptable classes did not contain
assignment errors, such as country name. Any missing entries were referred back to the contributor for completion, or
else were completed from the original publication or other
information source where available.
One of the most time-consuming tasks with the pollen data
was to ensure standardisation of the original taxon names
submitted by the contributor. These all had to be checked
for language, typographical errors, and other issues and then
assigned an internationally accepted taxa name according
to the EPD common taxa “p_vars” table. If the name did
not exist in the EPD taxa table it was checked (using http:
//www.theplantlist.org/, last access: 20 January 2020) that it
was spelled correctly and was not a synonym. It was then
https://doi.org/10.5194/essd-12-2423-2020
B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
checked against the Neotoma pollen taxa table and assigned
the Neotoma-accepted taxa name if there was a match. If it
was not in the Neotoma taxa table, and it was established
to be a genuine taxa name, then it was added to the EMPD
taxa table as a new taxon. Note that although the EMPD is
designed to be as compatible with the EPD as possible, the
EMPD and EPD do not have a common taxa list, and the
EMPD has many more taxa than appear in the EPD.
The accepted names for the fossil data in the EPD or
Neotoma should be directly compatible with the accepted
names in the EMPD, but some caution needs to be applied
in integrating the two datasets since the EMPD contains additional accepted names that do not occur in the EPD or
Neotoma. Where possible the EMPD assignment of accepted
names respects the taxonomic resolution of the EPD- and
Neotoma-accepted names. This means that where a new original taxa name is submitted to the EMPD that does not already occur in the existing databases, it is assigned the EPDor Neotoma-accepted name according to the existing taxonomic hierarchy. For example, if the new submitted original
taxa name is a new species that does not occur in the EPD
or Neotoma, and there is an existing accepted name at genus
level, then the new species name is assigned the accepted
name at the genus level. The assignment of accepted names
is complicated because it requires an appreciation of differences in pollen morphology and of the reliability of identification, which can vary given the differences in skill and
experience of the different analysts who contribute to the
database. In addition, there are also important geographical
considerations to take into account. For instance, the EMPD
conforms to the EPD-accepted names but these are heavily
European orientated, while the EMPD has much more data
from regions such as eastern Asia where some of the accepted names are not strictly appropriate. However, in all
cases we have retained in the EMPD all of the original taxa
names as they were submitted by the original contributor after cleaning for typographical errors.
In the process of updating the EMPD we have harmonised
as much as possible the taxa names in the EMPD with those
found in the current EPD, including those names previously
in the EMPD1 that have since been included in the EPD.
When both the EPD and EMPD are included in the Neotoma
database, then all of the taxa will exist in a single standardised taxa table consisting of all of the taxa in all of the
databases.
Once the pollen data and metadata entry tables had been
manually completed and checked, these were then uploaded
into a Postgres database where a second series of automated quality control procedures were undertaken. These automated checks repeated many of the earlier manual checks,
including ensuring that all open and closed fields were correctly completed and that the taxa names conformed to the
database standardised taxa names (the “p_vars” table). In addition, it was also necessary to manually standardise worker
https://doi.org/10.5194/essd-12-2423-2020
2431
names, address details, and data references across different
datasets submitted to the database.
After the data had passed these database checks, each contributor was then asked to look again at their data as they
were now stored in the database. Contributors were able to
do this using the online data viewer, which provided an intuitive interface to the database that could be navigated without
any prior experience of database systems. Locations for each
site/sample could be checked using the viewer map interface,
pollen data could be checked using a graphical (histogram)
display, and metadata could be checked using a table view of
all of the metadata fields. Any issues highlighted by the contributors were then corrected in the database. It was only after completing these final contributor checks that the EMPD2
database was deemed suitable for public release.
As well as adding new data, we also undertook a short
review of the data in the original EMPD1. A cross-check between the country attributed to a site and the actual country
where the site was located revealed that around 20 sites had
either the wrong location or wrong country code. The geolocation data for around 250 samples in Morocco in EMPD1
have now been removed and placed in the information field.
These were all highlighted in EMPD1 as having intractable
geolocation errors (Davis et al., 2013), and it was felt that by
removing the corrupt information from the geolocation field
it would discourage their accidental use. In compensation the
EMPD2 now includes new high-quality data from Morocco
(see next section).
3
3.1
Results
Spatial sampling
The amount of data in the database has increased by 60 %,
and the EMPD2 now holds 8134 samples compared to 4826
samples in the EMPD1. The country that has experienced
the largest increase in samples is Russia, which has gained
2274 more samples on top of the 379 samples already in the
EMPD1 (Fig. 1). Other significant improvements in data coverage have been made in Italy, Norway, and Spain, while data
are available for the first time from other countries such as
Japan, Cyprus, and Kyrgyzstan. The increase in data from
Russia reflects a general improvement in data coverage in
EMPD2 from eastern Europe across to Asia (Fig. 2), prompting a renaming of the database from the “European” to the
“Eurasian” Modern Pollen Database.
Countries where there are still relatively few or no samples
despite being both relatively populous and having an active
palynological community include Belgium, the Netherlands,
Hungary, Czech Republic, and Slovakia. There are also virtually no samples from the Balkans. Despite the generally
excellent coverage over Scandinavia, north-central Sweden
remains poorly sampled, a feature that is also reflected in
the lack of fossil pollen data from this area in the EPD.
Further east, the distribution of samples tends to be best in
Earth Syst. Sci. Data, 12, 2423–2445, 2020
2432
B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
Figure 1. A flow diagram showing the data processing and quality control steps taken in constructing the EMPD2 database.
the more populous regions and those with better transport
infrastructure. Notable areas across northern Eurasia where
we still lack samples include the steppes of Ukraine and
Kazakhstan and the Central Siberian Plateau. Further south,
most of China and Mongolia are well covered by the Chinese Pollen Database (now partly released by Herzschuh et
al., 2019), and as mentioned earlier, there are efforts in India to improve data coverage in this region. A more difficult problem is the lack of samples from many of the Central
Asian countries including Turkmenistan, Uzbekistan, Tajikistan, Afghanistan, and to some extent Pakistan, where access
for scientists is currently difficult or hazardous, and where
there are few locally trained scientists. The lack of modern
pollen data from these regions is also reflected in a lack of
fossil pollen studies from these countries.
3.2
Altitudinal sampling
The representativeness of the sample coverage in the vertical
spatial domain is not easily discernible from a standard twodimensional map presented in Fig. 3. Vertical climate and
vegetation gradients are much steeper than horizontal gradients, and hilly and mountainous terrain typically holds a
greater variety of vegetation and climate types than can be
shown on a continental-scale map. We make a better attempt
to show this by plotting the distribution of samples by altitude on a hypsometric (or cumulative frequency) curve for
the Palearctic study region (Fig. 4). This shows that the number of samples generally follows the proportion of land area
represented at each elevation, with more samples at lower altitude, but there is still the presence of samples as the altitude
gets higher. Data coverage has improved in particular in the
500–2500 m range between EMPD1 and EMPD2. The upper
part of the altitudinal range above 3500 m is dominated by
the Himalayas and the Tibetan Plateau, which is covered by
the Chinese Pollen Database (Herzschuh et al., 2019).
3.3
Climate and vegetation sampling
The distribution of the EMPD2 samples across the vegetation biomes of the region (from Olson et al., 2001) is shown
in Fig. 4. Biomes that are well sampled within the Palearctic
region include most of those that occur in Europe, namely
Earth Syst. Sci. Data, 12, 2423–2445, 2020
Mediterranean scrub and temperate forests and the western
range of the boreal forest/taiga and tundra. Less well sampled are the temperate shrub and grasslands and deserts of
the Central Asian steppe, and the eastern range of the boreal
forest/taiga and tundra. Again, the Chinese Pollen Database
(Herzschuh et al., 2019) covers much of the montane biomes
of the Himalayas and Tian Shan, the grasslands and deserts
of the Gobi area and Mongolia, and temperate and tropical
forest biomes of East Asia.
While a conventional map such as Fig. 5a can show how
samples are distributed across different biomes in geographical space, it does not show how well those samples are distributed in climate space. Large areas of Earth may have the
same or similar climate, and the distribution of samples in
conventional space does not necessarily equate to how well
climate space has been sampled. Climate space is important
because pollen-based climate reconstructions depend on the
use of modern pollen calibration datasets that fully sample
the available climate space associated with any particular
vegetation type. Figure 5b shows the same information as
Fig. 5a, but this time in climate space. This indicates that the
EMPD2 samples appear better distributed in climate space
than geographical space, but that there are fewer samples to
represent the more extreme climates found at the edges of
the modern climate space (such as tundra, deserts, and xeric
scrublands). This is shown more clearly in Fig. 6b, where
the Euclidean distance is calculated between the climate of
each of the pollen samples in EMPD2 and all of the available climate space of the Palearctic region. This was done
using mean annual temperature and precipitation from the
WorldClim2 modern climatology (Fick and Hijmans, 2017),
normalised to make the different scales comparable. The climate of the pollen site were assigned according to the nearest
grid point within the 30 second (approximately 1km2 ) resolution of the WorldClim2 grid, whilst the climate of the region
was taken from the grid itself. The darker regions around the
edges of the climate space show where in climate space the
EMPD2 still lacks representative samples. These poorly represented climates are then shown in physical space in Fig. 6a.
This indicates poor representation in the North African and
Persian deserts, which are outside the Palearctic study region,
but also areas within the Palearctic region including the Cen-
https://doi.org/10.5194/essd-12-2423-2020
B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
Figure 2. A comparison of the number of samples in EMPD ver-
sions 1 and 2, by country. Countries with only small numbers of
samples are listed at the bottom; values in brackets indicate new
samples in EMPD2.
tral Asian steppe and more mountainous areas of the Central
Siberian Plateau and Siberia east of Yakutsk (130◦ E).
4
Discussion
The increase in size of the EMPD in version EMPD2 has
greatly improved the coverage of modern pollen samples
across Eurasia in relation to geographical, vegetation, and
climate space. This will make it possible to create more accurate reconstructions of past land cover and climate given the
commensurate improvements in available climate and vegehttps://doi.org/10.5194/essd-12-2423-2020
2433
tation analogues of fossil pollen samples. The database continues to increase in size through a mixture of newly submitted samples from old studies that predate EMPD1 and
more recent studies that have occurred since EMPD1 was
first made available. It is still likely that older data will continue to be submitted to the database, especially as it becomes
better known, but it is unlikely that the database will continue
to grow at the present rate given that much of the available
older data are now expected to have been submitted. However, surface sample work has traditionally been less likely to
be published in international journals, often confined to Masters or PhD theses or other grey literature, and the amount of
data in existence may therefore be difficult to estimate.
To help promote access and use of the EMPD, we have
created an online data viewer https://empd2.github.io (last
access: 20 January 2020) (Fig. 7) (Sommer et al., 2020). This
allows the database to be viewed using an intuitive clickable
map that displays the location of each sample, associated
metadata, and a plot of the pollen data themselves. It is also
possible to download the data associated with a sample and
to make suggested corrections. Other options allow the user
to select subsets of the database to be viewed, for instance
associated with particular individuals, projects, or research
groups. The EMPD viewer allows access to the database in
an intuitive way without requiring any particular computer
expertise. This has been very important in not only allowing
the casual user to view and access the data in the database,
but also in allowing the data submitters to view their data
as they exist in the database after they have been processed,
providing a further quality control check. The data viewer is
open source and can be adapted for other uses.
The EMPD data viewer is embedded in a web framework
that is based on the version control system GitHub, where
users and data contributors can transparently submit new data
or raise issues with the existing data. These can then be reviewed in an open discussion with the database managers.
This framework allows ongoing development of the EMPD
in the future, and the usage of a free version control system
additionally ensures full transparency, stability, and maintainability of access to the data, independent of funding and
changing collaborations.
As well as simply adding more samples as they are submitted, we hope that the future development of the EMPD will
also be more targeted. It is clear that although sample coverage is much improved in EMPD2, gaps still exist in the data
coverage for Eurasia that would be useful to fill (Figs. 4–6).
One way to do this is to encourage fieldwork to collect samples from these data-poor regions. This approach however is
expensive, since the reason why many of these areas remain
unsampled is precisely because of their remoteness and the
difficulty and expense involved in accessing them. An alternative that has not been widely exploited is to analyse soil
and sediment samples gathered as a result of fieldwork expeditions organised with a different objective in mind. We hope
that by demonstrating the important sampling gaps in the
Earth Syst. Sci. Data, 12, 2423–2445, 2020
2434
B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
Figure 3. Map of samples included in EMPD versions 1 and 2 and two other datasets (see text).
Figure 4. Distribution of samples by altitude for the Palearctic re-
gion (compared to land area at each altitude).
or if a data contributor makes a significant contribution to
the analysis of the data or to the interpretation of results.
For large-scale studies using many EMPD/EPD records, contacting all contributors or making them co-authors will not
be practical, possible, or reasonable. Under no circumstance
should authorship be attributed to data contributors, individually or collectively, without their explicit consent.
In all cases, any use of EMPD data should include the following or similar text in the acknowledgements: “Pollen data
were extracted from the Eurasian Modern Pollen Database
(part of the European Pollen Database), and the work of the
data contributors and the EMPD/EPD community is gratefully acknowledged.” Upon publication, please send to the
EMPD/EPD a copy of the published work or a link to the
electronic resource. Your assistance helps document the usage of the database, which is critical to ensure continued support from funders and contributors.
6
database it will encourage individuals and research groups
to consider fieldwork and data analysis in these underrepresented regions.
5
Ethical statement and how to acknowledge the
database
Users of the database are expected to follow the guidelines of the EPD. These state that normal ethics apply
to co-authorship of scientific publications. Palaeoecological
datasets are labour intensive and complex, they take many
years to generate, and they may have additional attributes
and metadata not captured in the EMPD/EPD. Users of data
stored in the EMPD/EPD should consider inviting the original data contributor of any resultant publications if that contributor’s data are a major portion of the dataset analysed,
Earth Syst. Sci. Data, 12, 2423–2445, 2020
Data availability
The
EMPD
is
available
at
https://doi.org/10.1594/PANGAEA.909130
(Chevalier
et al., 2019). The data are available as (1) an Excel spreadsheet, (2) a PostgreSQL dump, and (3) a
SQLite3 portable database format. The data can also be
viewed online using an interactive map-based viewer
at https://empd2.github.io/?branch=master (last access:
20 January 2020).
7
Conclusions
The EMPD remains the only public, quality-controlled, and
standardised database of modern pollen samples for the
Eurasian region. This paper describes a recent update to the
EMPD in which the database has increased almost 60 % in
https://doi.org/10.5194/essd-12-2423-2020
B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
2435
Figure 5. (a) Biome map and sample locations. (b) Biomes and samples in climate space. Biome data from Olson et al. (2001)
size, so that it now contains data on 8663 modern pollen
samples. This reflects an expansion in spatial coverage across
northern and eastern Asia, which has prompted a change in
the name of the database from the European to the Eurasian
Modern Pollen Database. The improvement in spatial coverage has increased the number of vegetation and climate
analogues for fossil pollen samples in the region that will
directly improve reconstructions of past vegetation and climate. However, areas of poor data coverage still exist, particularly in the more remote regions of central and northern
Asia and the Middle East. Development of a new map-based
online data viewer for the database is already helping im-
https://doi.org/10.5194/essd-12-2423-2020
prove access to, and participation in, the EMPD, as well as
quality control. We expect the EMPD to continue to grow in
the future, although probably at a slower rate given that most
of the previously published “heritage” data have now been
incorporated. At present the EMPD remains associated with,
but physically independent of, the EPD. It is also subject to
only periodic updates. In future we expect both the EPD and
EMPD to become fully incorporated into the global Neotoma
Palaeoecological Database, which will provide seamless integration of the fossil and modern data, whilst also allowing
continual updates using Neotoma data management tools.
Earth Syst. Sci. Data, 12, 2423–2445, 2020
2436
B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
Figure 6. (a) The Euclidian distance between the climate of each modern pollen sample location (as shown in Fig. 3) and the climate of the
entire Palearctic region. (b) The same as (a) but shown in climate space. Note that for clarity the values < 0.05 are shown by dark grey in (a),
but white in (b). The darker the brown shading, the less well that climate is represented amongst the samples. The climate of each pollen site
was assigned according to the nearest grid point within the 30 s (approximately 1 km2 ) resolution of the WorldClim2 grid, whilst the climate
of the region was taken from the grid itself.
Earth Syst. Sci. Data, 12, 2423–2445, 2020
https://doi.org/10.5194/essd-12-2423-2020
B. A. S. Davis et al.: The Eurasian Modern Pollen Database (EMPD), version 2
2437
Figure 7. Screen grab of the EMPD online data viewer (available at https://empd2.github.io, last access: 20 January 2020).
Author contributions. BASD wrote the manuscript with input
Review statement. This paper was edited by Thomas Blunier and
from all of the authors. BASD, MC, and PS designed and implemented the database and data viewer. BASD, MC, PS, MZ, WF,
LNP, AM, and VC all helped with data processing. All of the remaining authors contributed pollen sample data and were involved
in the original collection, preparation, identification, and counting
of these data.
reviewed by two anonymous referees.
Competing interests. The authors declare that they have no con-
flict of interest.
Acknowledgements. The EMPD includes data obtained from
the Neotoma Palaeoecology Database and the European Pollen
Database. The work of the data contributors and the scientific community supporting these databases is gratefully acknowledged.
Financial support. This research has been supported by the
Swiss National Science Foundation (grant no. 200021_169598),
with additional support from the University of Lausanne.
https://doi.org/10.5194/essd-12-2423-2020
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