General Grievous uses his latest weapon, the Malevolence, to destroy Plo Koon's fleet. Stuck in an escape pod with three clone troopers, Koon fends off more battle droids while Anakin and Ahsoka mount a rescue mission.
The Malevolence has been revealed to the Republic. Anakin and Shadow Squad, accompanied by Ahsoka and Master Koon, launch an attack in their new long-range Y-wing bombers.
Padmé Amidala and C-3PO are taken hostage by Grievous aboard the Malevolence. Anakin and Obi-Wan board the ship to rescue the senator and her protocol droid.
Alone on a distant outpost, Commander Cody and Captain Rex must inspire the rookie clones to believe in themselves to stave off a commando droid invasion.
Anakin, Ahsoka and replacement droid R3-S6 embark on a dual rescue/sabotage mission when they discover R2-D2 is being held at General Grievous' secret enemy listening post.
Padmé travels to Rodia to meet with old family friend Onaconda Farr about the lack of food rations. Unfortunately Farr has just made a deal with the Separatists. Padmé is imprisoned, leaving it up to Jar Jar Binks and C-3PO to rescue her.
Ahsoka and Master Luminara escort captured Nute Gunray to trial, unaware that Count Dooku has dispatched his deadly apprentice Asajj Ventress to free the prisoner and eliminate the Jedi.
While negotiating Count Dooku's ransom, Anakin and Obi-Wan are taken prisoner. The Jedi and Sith form an unlikely alliance in a bid to escape, with Jar Jar Binks as their only hope.
Anakin is injured while rescuing Aayla Secura from Super Battle Droids equipped with rocket packs. Ahsoka crash-lands their shuttle on the neutral planet of Maridun, where the native Lurmen villagers refuse to takes sides in the war.
While the Jedi combat a new Separatist weapon, the pacifist Lurmen must decide whether they will surrender or fight with Anakin, Ahsoka and Aayla Secura.
While investigating the disappearance of a clone security force, Anakin and Obi-Wan get caught in the middle of a conflict between the territorial inhabitants of a desolate ice world and the greedy representatives of a nearby moon.
Anakin and Obi-Wan discover evidence of a traitor amongst their ranks while attempting to lead Republic forces to liberate Christophsis from a Separatist siege.
Evil scientist Dr. Nuvo Vindi is recreating the dreaded Blue Shadow Virus in his secret underground lab on Naboo. When he captures Senator Amidala and Jar Jar Binks, Anakin and Obi-Wan mount a rescue operation.
The fatal Blue Shadow Virus is released, infecting Ahsoka, Padmé and many clone troopers. Anakin and Obi-Wan must find the antidote on a mysterious planet from which no visitor has ever returned.
The Separatists have invaded the Twi'lek home planet of Ryloth. Anakin and Ahsoka lead a squadron of fighters against a Trade Federation battleship commanded by Neimoidian Captain Mar Tuuk.
To sabotage a powerful Separatist weapon, Obi-Wan and a small clone force enter an occupied town, and discover that its residents are being used as a living shield.
Mace Windu and his clone troopers aim to liberate the Ryloth capitol of Lessu but needs to acquire the help of a Twi'lek resistance group led by Cham Syndulla in order to do so.
To free crime lord Ziro the Hutt, bounty hunters seize control of the Senate Building and take hostages, unaware that Anakin Skywalker is still inside.