The Evolution of Sex Chromosomes: L.-J. Ayling and D.K. Griffin
The Evolution of Sex Chromosomes: L.-J. Ayling and D.K. Griffin
The Evolution of Sex Chromosomes: L.-J. Ayling and D.K. Griffin
Establishing the value of sex has proved difficult in theoretical population genetics and evolution studies (Hurst and Peck,
1996). Sex accelerates evolution, creating unique individuals,
with an ever-widening pool of ancestors. Sex is a worthwhile
(albeit expensive) way of reshuffling the genetic composition by
recombination, bringing together advantageous genes increasing the likelihood of survival, reproduction and the ability to
cope with the changing environment. Sexual organisms reaped
the benefits, rapidly evolving and growing more complex com-
pared to their asexual counterparts which led to sexual-dimorphism. This is often subtle, like the bright face of the baboon
but can be more overt and costly to the organism: For instance
male peacocks have an ornate display of feathers, attracting
predators and hindering escape and the elaborate 12-foot antlers of the Irish elk may have led to their extinction (Gerhart and
Kirschner, 1997; Crow, 1994). The advantages and disadvantages of sexual reproduction depend upon the immediate and
long-term gains. In the short-term, sex is costly and time consuming however, in the long run, new mixtures of genes constantly arise by genetic recombination. This may provide an
organism with the most advantageous combinations of genes,
making it more likely to survive, reproduce and pass on its
genes. These are considered in Table 1 and compared to parthenogenic reproduction.
Request reprints from Dr Darren K. Griffin, Cell and Chromosome Biology Group
Department of Biological Sciences, Brunel University
Uxbridge, Middlesex, UB8 3PH (UK)
telephone: 01895 274000 x2653; fax: 01895 274348
e-mail: Darren.Griffin@brunel.ac.uk
ABC
Fax + 41 61 306 12 34
E-mail karger@karger.ch
www.karger.com
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Female Sterility
Mutation
Androdioecy
Male Sterility
Mutation
Cosexuality
Male Sterility
Mutation
Female Sterility
Mutation
Sexual reproduction
Parthenogenic reproduction
Disadvantages
Advantages
Advantages
Disadvantages
has an obvious role; she incubates the offspring, gives birth and
often raises it, the question still arises: why do males exist
except to impregnate the females? They have been likened to
parasites, having the pleasures of reproduction, passing on their
genes, with few of the pains involved (Jones, 1994). Charlesworth (1991) postulated that dioecy evolved from cosexuality.
Dioecy from cosexuality requires a minimum of two mutational steps. One step (gynodioecy) is a polymorphism (common mutation within the population) producing females from
an inability to produce male gametes via a male sterility mutation. The second phase: androdioecy, converts cosexuals into
males via a female sterility mutation. These steps occur simultaneously resulting in a mixed population of single sex (dioecy)
and cosexuals. Eventually, the remaining co-sexual individuals
would be selected against, leaving only organisms that display
dioecy (Charlesworth 1991; Charlesworth and Charlesworth,
2000). This process is demonstrated in Fig. 1. The process of
selecting in favour of dioecy is driven by two causal factors:
resource reallocation and avoidance of inbreeding (Charlesworth, 1991; Charlseworth and Charlesworth. 2000) i.e. in the
evolution of a female, mutations cause a decrease in male fertility and an increase in female fertility. Therefore, more time and
energy can be spent in producing one gamete instead of two,
126
Gynodioecy
Dioecy
No. of X
chromosomes
No. of sets of
autosomes
X:A ratio
Sex produced
3
3
2
2
1
1
2
3
2
3
2
3
1.5
1.0
1.0
0.67
0.5
0.33
meta-female
female
female
intersex
male
meta-male
Reptiles
Snakes
Lizards
Others
Insects
Birds
Mammals
Fish
Amphibia
Governing SDM
Governing
heterogametic sex
Occurrence in
population
ZZ/ZW
none
temperature dependant
none
ZZ/ZW
XX/XY
none
none
ZW female
almost universal
sporadic
practically zero
sporadic
universal
universal
sporadic
sporadic
ZW female
XY male
flies have both male and female characteristics whereas metamales and females have poorly developed sexual characteristics
and often a shorter lifespan. This suggests that genes controlling
female sex development are on the X and male developmental
genes are on the autosomes. (Winter et al., 1998).
3.3.4. Sex determination in fish and amphibians: Only 2
3% of fish species have had their sex determining mechanism
examined. Cytogenetic studies are often impaired as fish usually have large numbers of small chromosomes. The sex determining mechanisms are varied and so far have been seen to
include XX/XY, ZW/ZZ, polygenic and XX/XO systems. The
SDMs also include more complex X-autosome and Y-autosome translocations such as: X1X1X2X2/X1X1X2, W1W2/ZZ,
X1X1X2X2/X1X2Y (Sola et al., 1981). Amphibians are difficult
to study, having a long generation time and the heterogeneity
appears independent of evolutionary divergence. The mechanisms seen include XX/XY and ZZ/ZW. The sex of some fish
and amphibian species are also strongly influenced by external
temperature and hormones (Schmid et al., 1989).
3.3.5. Chromosomal sex determination, a summary: The
classification of the chromosomes as X, Y, W and Z is used
solely to differentiate between the male and female heterogamety. The avian Z and W chromosome have a different complement of genes to that of the mammalian X and Y chromosome, suggesting that mechanism evolved independently (Baverstock et al., 1982, Dominguez-Steglich et al., 1990). These
systems are summarised in Table 3; in this review we consider,
primarily evolution of the mammalian sex chromosomes.
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Table 2. Ratio of X chromosomes to sets of autosomes, and sex determination in Drosophila. Adapted from Winter et al. (1998)
Recombination Suppression
via Genic, Structural and/or Conformational changes
128
mutation will be repaired. The degeneration of the Y, by Mullers Rachet, led to the sex chromosomes becoming heteromorphic (see next section). The increased differentiation of the
sex chromosomes resulted in a decreased meiotic activity of the
Y, causing further cycles of degeneration (Clark and Wall,
1996). This is simplified in Fig. 2.
4.4. Mullers Ratchet
Mullers Ratchet describes the mechanism by which the deleterious mutations accumulate on the Y chromosome (Muller,
1964; Felsenstein, 1974; Charlesworth, 1978). The mutation
rate in all chromosomes is approximately 1091011 per incorporated nucleotide (Allen, 1970; Thacker, 1985) however, the
mutations are more likely to become fixed in the Y chromosome by reducing the likelihood of recombination. Advantageous mutations are subjected to selective sweeps and fixation
becomes more rapid. Mullers Ratchet can be explained using
the Y chromosomes of three populations. The Y chromosomes
in population A have zero to three mutations, the chromosomes with zero mutations are lost from the population by random drift. The mutations prevent the Y chromosome from
recombining with the X, therefore the regeneration of mutant
free chromosomes are prevented and the ratchet is said to move
on one notch. The result of this is population B, the Y chromosomes here have one to four mutations. The chromosomes with
one mutation are lost by random drift and once again not
replaced. The resultant third generation, population C, have
between two and five mutations and so the ratchet continues to
be moved on a notch. This is illustrated in Fig. 3. The Y chromosomes were subjected to many inconsequential and random
alterations, causing the rapid acquisition and loss of many
sequences, making the Y chromosome the least conserved
genetic element in the genome (Dorit et al., 1995; Hammer,
1995; Whitfield et al., 1995).
Population A
Population B
Population C
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CpG
Islands
SRY Pseudogene
700bp
SRY
2.5kb
1.1kb transcript
Fig. 5. The basic molecular structure of the human SRY gene. Adapted
from Clark and Wall (1996).
Fig. 6. The basic interactions between SRY and DNA. The SRY protein
contains an HMG box which interacts directly with the AATAAG DNA consensus sequence to bend it at an angle essential for transcription.
130
CpG
Islands
f
PAR
PAR
SRY
SST
SST
SST
SST
SST
SSTM
SST
SSTM
XIST
SOX3
SOX3 SOX3
Proto Proto
Y
X
SRY SOX3
Proto Proto
Y
X
SRY SOX3
Proto Proto
Y
X
SST
XIST
SRY
Proto Proto
Y
X
SSTM
SRY
SSTM2
SOX3
Proto Proto
Y
X
X Y
Fig. 7. Flow diagram to depict a theoretical sequence of events that led to the evolution of the sex chromosomes. (a) Two
homologous chromosomes. (b) The mutation of SOX3 to SRY to form the proto sex chromosomes. (c) The mutation of a sexually
selected trait (SST) to a sexually selected trait in males (SSTM) on the proto Y chromosome. (d) Mutation on the proto X produced
the XIST which suppressed recombination. (e) Accumulation of mutations on the proto Y which may have resulted in rearrangements. (f) Additions of autosomes onto the sex chromosmes to produce the PAR and other SSTM genes.
SOX3
SOX3
SOX9
Male
Developmental
Pathway
SRY
SOX3*
(1 copy = Male)
SOX9
Male
Developmental
Pathway
SOX3* + SOX3
(2 copies = Female)
Fig. 8. (a) The interactions between SOX3, SRY and SOX9. The dotted
lines represent an inhibition, the solid arrows represent an activation and the
dashed arrows a mutation. (b) The suggested interaction of a theoretical
mutant SOX3 (SOX3)) Gene. The dotted lines represent inhibition, the solid
arrows activation and the dashed arrows a mutation.
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SRY
SOX-9
AMH
Continued Testis
Determination
Cascade
Temperature
Dependant Sex
determination
Species
Specific Male
determining
Temperature
AMH
SOX-9
Continued Testis
Determination
Cascade
132
Mammals
(XX/XY sex
determination
system)
Factor
Mechanism of action
XIST gene
Inversion loops
Gain of
heterochromatin
Large regions of heterochromatin reduced the likelihood of recombination and are rarely seen
to form chiasmata in Drosophila (Karpen et al., 1996). The origin maybe from selfish or
parasitic DNA whose only function is to propagate itself.
(15)
Pig
STS = PAR
Prosimians
STS = Autosomal
Rat
STS = X-linked
Mouse
STS = PAR
Human
STS = X-linked
Fig. 11. Mammalian evolutionary tree denoting the location of the STS
Gene (approximate time of divergence in brackets, Myrs).
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al., 1991; McKay et al., 1992) and are termed X recent additions (XRA) (Glas et al., 1999). XRA genes are located in three
marsupial autosomes suggesting at least three different autosomal additions. XRA is conserved in eutherians suggesting the
addition occurred after the eutherian and metatherian lineages
diverged, but before the eutherian lineages diverged from each
other. The XRA and XCR regions are shown in Fig. 14 (Graves
and Watson, 1991). The conservation of the XRA differs
between eutherians as shown in Fig. 15 (Quilter et al., 2002).
Fig. 12. The human Y chromosome indicating the presence of the PAR, Y-chromosome conserved (YCR) region with known genes, Y chromosome recently added (YRA) region and area of
heterochromatin.
7.1. X inactivation
Genes are progressively mutated and lost on the Y, in order
to prevent a partial monosomy phenotype in the male, a system
of dosage compensation has evolved. Dosage compensation
mechanisms exist in Drosophila, Caenorhabditis elegans and
partially in marsupials (Ohno, 1967) (see Fig. 16). Eutherians
however have evolved a specialist mechanism of dosage compensation via X inactivation through the XIST gene to produce
similar phenotypes in both sexes as one X chromosome is inactivated in the female.
7.1.1. The Lyon hypothesis of X inactivation: Lyon and Russell (1961) independently postulated the phenomenon of X
inactivation (Lyonisation). They postulated that one X chromosome is randomly inactivated in all tissues at female embryogenesis, affecting the entire chromosome with all cell
descendants displaying the same inactivation pattern (Lifchytz
and Lindsley, 1972; Gartler et al., 1991). Breaching Lyons
hypothesis, marsupials (and maybe mice) preferentially inactivate the paternally derived X chromosome via an imprint (Takagi and Sasaki, 1975; Zuccotti and Monk, 1995). Mice are
now thought to lose their paternal imprint after the first dozen
rounds of embryonic cleavage, randomising inactivation during the differentiation of the inner cell mass (Hartshorn et al.,
2002).
7.1.2. Mechanisms of preferentially inactivating paternallyderived X chromosomes: Inactivation is controlled by the X
inactivation centre (Xic) at the Xce locus, XIST is accepted as
the gene controlling it. XIST is the only known gene to be
expressed exclusively on the inactive X and transcribed but not
translated. Originally, XIST may have evolved as a factor to
suppress recombination, inactivation may have been a coincidental effect (Ellis, 1996). The XIST RNA binds to the X chro-
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Human
Pig
PRKX
STS, KAL, AMELX
Mouse
Usp9x
Utx
AMELX
EIF2s3X
ZFX
Zfx
EIF2s3X, ZFX
Eif2s3x
USP9X
DBX
UTX
Smcx
USP9X
DBX, UTX
Amelx
SMCX
Fig. 15. Comparisons of the order of Xp genes
in the human, pig and mouse. Adapted from
Quilter et al. (2002).
SMCX
Xq
Xq
Sts
Xq
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Female XX
(Active Xs)
Male XY
(Active X)
Oogenesis
(CpG sites remain methylated)
Spermatogenesis
(Demethylation of CpG sites)
Active Xs
Inactive X
Me
Promoter
CpG
CpG
15kb
XIST
XIST
Fertilisation
Female Offspring
Maternal
Active X
XX
136
Paternal
Inactive X
Male Offspring
Paternal
YX
Maternal
Active X
Male
Y
Female
Male
Female
Parents
Offspring
Male has
disease
phenotype
Maternal
Paternal
Preferentially inactivated
chromosome
Active Inactive
Active Inactive
Non-functional
protein produced
Functional protein
produced
Maternal
Paternal
Active Inactive
Active Inactive
Non-functional
protein produced
Randomisation
Functional protein
produced
Randomisation
Table 5. The functions of the Zfx/y genes in the human and mouse. The house keeping genes are
active genes with original function, the inactivated gene is underlined and the gene with a new function
(i.e. from a mutation) is highlighted by italics. Human ZFX and ZFY have the same function so have
two active housekeeping genes. Mouse Zfx and Zfy have different functions so have one active housekeeping gene, requiring the second gene to be inactive in females to compensate for the male specific
function of Zfy in males
Males
Zfx
Zfx
Zfx
housekeeping function
male-specific function
housekeeping function
housekeeping function
housekeeping function
housekeeping function
housekeeping function
inactivated
7.1.4. A further breach of Lyons hypothesis: Lyons hypothesis states that the entire inactive X is inactivated. The main
exceptions are the PAR genes, but others are also exempt. ZFX
(Xq21.3 q22.1) encodes a zinc finger protein that binds to
DNA, it escapes X inactivation in humans, but not in mice
(Adler et al., 1991). The explanation lies in the Y chromosome
homologue: ZFY. ZFX and ZFY are 97 % homologous suggesting that they bind the same or similar DNA sequences. In mice
Zfx is expressed in male and female adult tissues, whereas Zfy
is only expressed in adult and foetal male tissues, each have
different, non-overlapping functions (Schneider-Gadicke et al.,
1989; Palmer et al., 1990; Graves, 1998, 2000). This is summarised in Table 5.
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Humans
Mice
Females
Zfy
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