Behavior of Ylides Containing N, O, and C Atoms As Hydrogen Bond Acceptors
Behavior of Ylides Containing N, O, and C Atoms As Hydrogen Bond Acceptors
Behavior of Ylides Containing N, O, and C Atoms As Hydrogen Bond Acceptors
Abstract: The hydrogen bond (HB) basicity of a series of ylides containing nitrogen, oxygen, or carbon as
heavy atoms, as well as the influence of the formation of the HB complexes on their structure, has been
studied. In addition, in this paper we propose the formation of some rather strong HBs (that could be considered
low-barrier hydrogen bonds, LBHBs) between ylides and different neutral molecules. The ylides chosen for
the study were H3N+-N-H, Me3N+-N-H, H2O+-N-H, Me2O+-N-H, H2O+-O-, Me2O+-O-, and Me3N+C-H2. As HB donors, classical donors such as HF, HCN, and HCCH were used. The analysis of the protonation
energies of the ylides and the optimized geometries, interaction energies, and characteristics of the electron
density of the complexes shows that these ylides are very good HB acceptors, forming stable complexes even
with weak HB donors. With strong donors, when the proton transfer did not take place, very strong HBs were
formed with quite large interaction energies and very short HB distances which could be considered as LBHBs.
Moreover, we have found that the sign of the Laplacian of the electron density at the bond critical point
(2FBCP) and that of the energy density (HBCP) could characterize the strength of HBs. Thus, weak HBs (EI <
12.0 kcal/mol) show both 2FBCP and HBCP > 0, and medium HBs (12.0 < EI < 24.0 kcal/mol) show 2FBCP
> 0 and HBCP < 0, while strong HBs (and therefore LBHBs; EI > 24.0 kcal/mol) show both 2FBCP and HBCP
< 0.
Introduction
Ylides as hydrogen bond (HB) acceptors have been the
subject of a number of studies showing a high HB basicity and
finding, in some cases, rather strong HB interactions.1-3 The
HB complexes formed with these specific acceptors can show
low-barrier hydrogen bond (LBHB) interactions which are
particularly short and strong interactions and which have been
the focus of a great deal of attention.4
Platts and Howard theoretically investigated the ability of Ns
C or PsC ylides as HB acceptors with CsH donors.1,2 They
found that CsHC HBs with strengths up to 35 kJ/mol (8.4
kcal/mol) may exist. In the case of the amine and phosphine
oxides as HB acceptors, we have previously found that strong
HBs (>12 kcal/mol) or medium to strong HBs (10 kcal/mol)
can be formed with these ylides, even when weak donors such
as HCCH were considered.3 Moreover, when strong acids were
used as HB donors, a spontaneous proton transfer was observed.
The stability of ylides has been also extensively studied. As
early as 1983, Pople et al. performed a theoretical study of the
isomers and rearrangement barriers of even-electron polyatomic molecules, such as HNC, H2NCH, HOCH, H2NN, H3NCH2, H3NNH, H3NO, H2CC, H3CCH, H3CN, H2COH2,
H2CFH, NOH, HNOH2, HNFH, H2OO, and HFO, many of
* To whom correspondence should be addressed. Fax: 34-91-564 48
53. E-mail: rozas@iqm.csic.es.
(1) Platts, J. A.; Howard, S. T.; Wozniak, K. Chem. Commun. 1996, 63.
(2) Platts, J. A.; Howard, S. T. J. Chem. Soc., Perkin Trans. 2 1997,
2241.
(3) Alkorta, I.; Elguero, J. J. Phys. Chem. 1999, 103, 272.
(4) (a) Garcia-Viloca, M.; Gonzalez-Lafont, A.; Lluch, J. M. J. Phys.
Chem. 1997, 101, 3880. (b) Ramos, M.; Alkorta, I.; Elguero, J.; Golubev,
N. S.; Denisov, G. S.; Benedict H.; Limbach, H.-H. J. Phys. Chem. A 1997,
101, 9791. (c) Kumar, G. A.; McAllister, M. A. J. Am. Chem. Soc. 1998,
120, 3159.
(3)
where E(AB)AB represents the energy of the complex and E(A)A the
energy of the isolated monomer A calculated with its corresponding
basis set.
In addition, a corrected interaction energy (EI+BSSE) excluding the
inherent basis set superposition error (BSSE) has been evaluated. The
BSSE has been calculated using the Boys-Bernardi counterpoise
technique17 and eq 2:
used to describe the dimer, and E(A)A represents the energy for
monomer A using its geometry in the complex and its basis set.
The corrected interaction energies (EI+BSSE) have been calculated
with eq 3:
(2)
Rozas et al.
Figure 1. Structures of minimum energy found for the ylides calculated at the MP2/6-311++G** level. Distances in angstroms.
Table 1. Protonation Energy (Eprot, kcal/mol) of the Protonated
Ylides Calculated at the MP2/6-311++G** Level, Calculated
Including the B3LYP/6-31G* Zero-Point Scaled Vibrational
Correction (Ref 22)
X-Y + H+ f [X-YH]+
Eprot
H2O-NH + H+ f [H2O-NH2]+
H2O-O + H+ f [H2O-OH]+
H3N-NH + H+ f [H3N-NH2]+
H3N-CH2 + H+ f [H3N-CH3]+
236
209
251
280
Me2O-NH + H+ f [Me2O-NH2]+
Me2O-O + H+ f [Me2O-OH]+
Me3N-NH + H+ f [Me3N-NH2]+
Me3N-CH2 + H+ f [Me3N-CH3]+
248
222
262
288
Figure 3. Structures of minimum energy found for the HB complexes with the methylated ylides calculated at the MP2/6-311++G** level.
Distances in angstroms, angles in degrees.
(23) Rozas, I.; Alkorta, I.; Elguero, J. J. Phys. Chem. A 1997, 101, 9457.
(24) Alkorta, I.; Rozas, I.; Elguero, J. J. Phys. Chem. A 1998, 102, 9278.
Rozas et al.
Table 2. Interaction Energies without (EI, kcal/mol) and with the BSSE Correction (EI+BSSE, kcal/mol) for All the HB Complexes Studied
B3LYP/6-31G*
H2O-NH
H2O-O
H3N-NH
Me2O-NH
Me2O-O
Me3N-NH
Me3N-CH2
X-Y
H2O-O
H3N-NH
Me2O-NH
Me2O-O
Me3N-NH
Me3N-CH2
MP2/6-311++G**
EI
EI+BSSE
EI
EI+BSSE
EI
EI+BSSE
HF
HCN
HCCH
HF
HCN
HCCH
HF
HCN
HCCH
-14.5
-12.4
-13.3
-12.7
-17.1
-10.8
-10.8
-8.6
-9.4
-8.8
-13.5
-8.1
-10.2
-7.3
-12.1
-8.1
-12.4
-8.0
-9.1
-6.7
-11.4
-7.6
-11.4
-7.3
-11.0
-8.5
-12.8
-9.5
-13.4
-9.7
-8.6
-6.4
-10.1
-7.1
-10.4
-7.2
HF
HCN
HCCH
HF
HCN
HCCH
HF
HCN
HCCH
HF
HCN
HCCH
-32.1
-14.0
-10.1
-30.7
-13.0
-10.4
-33.7
-15.3
-9.4
-10.1
-23.2
-11.6
-7.4
-21.4
-9.8
-6.9
-23.5
-12.4
-6.4
-7.2
-21.5
-9.9
-5.3
-18.4
-8.5
-4.6
-26.8
-12.2
-6.4
-6.3
-20.0
-9.3
-4.7
-17.5
-8.2
-4.4
-25.3
-11.7
-5.9
-5.9
-21.2
-11.1
-7.1
-18.8
-9.5
-6.4
-24.6
-13.1
-8.3
-8.2
-16.9
-9.1
-5.3
-15.1
-7.9
-4.7
-20.2
-11.1
-6.1
-6.2
B3LYP/6-311++G**
H-Z
FBCP(X-Y)
2FBCP(X-Y)
HBCP(X-Y)
isolated
HCN
HCCH
isolated
HCN
HCCH
isolated
HCN
HCCH
0.161
0.176
0.175
0.222
0.244
0.232
0.269
0.276
0.273
0.206
0.165
0.164
0.318
0.250
0.280
-0.253
-0.294
-0.280
-0.089
-0.108
-0.106
-0.128
-0.155
-0.141
-0.236
-0.244
-0.241
isolated
HF
HCN
HCCH
isolated
HF
HCN
HCCH
isolated
HF
HCN
HCCH
isolated
HCCH
0.202
0.221
0.213
0.207
0.260
0.269
0.265
0.262
0.288
0.287
0.290
0.287
0.203
0.203
0.094
0.009
0.048
0.069
0.229
0.177
0.202
0.216
-0.324
-0.349
-0.345
-0.327
-0.244
-0.250
-0.139
-0.166
-0.155
-0.147
-0.177
-0.186
-0.183
-0.178
-0.259
-0.252
-0.259
-0.256
-0.243
-0.242
Table 4. Electron Density (FBCP, e/au3), Laplacian (2FBCP, e/au5), and Energy Density (HBCP, hartrees/au3) at the Bond Critical Point of the
HB Interactions within the Complexes Calculated at the MP2/6-311++G** Level
X-Y
H2O-NH
H2O-O
H3N-NH
Me2O-NH
Me2O-O
Me3N-NH
Me3N-CH2
a
H-Z
FBCP(YH)
2FBCP(YH)
HBCP(YH)
d(YH)a
HCN
HCCH
HCN
HCCH
HCN
HCCH
HF
HCN
HCCH
HF
HCN
HCCH
HF
HCN
HCCH
HCCH
0.030
0.013 (OH(CtC), 0.022)
0.020 (OHN, 0.039)
0.014 (OH(CtC), 0.026)
0.052
0.029 (NH(CtC), 0.014)
0.097
0.032
0.021
0.085
0.032
0.021
0.117
0.038
0.025
0.022
0.088
0.038 (0.064)
0.062 (0.108)
0.045 (0.069)
0.104
0.091 (0.053)
0.073
0.086
0.069
0.164
0.101
0.066
-0.001
0.093
0.070
0.046
0.000
0.001 (0.001)
0.000 (-0.004)
0.001 (0.000)
-0.011
0.001 (0.002)
-0.047
-0.001
0.002
-0.031
0.000
0.001
-0.070
-0.003
0.001
0.000
1.950
2.504 (2.116)
2.689 (1.763)
2.424 (2.020)
1.732
1.975 (2.536)
1.464
1.932
2.112
1.460
1.869
2.089
1.395
1.857
2.071
2.255
The HB distances (), at the same level of calculation, are also included.
H-Z-W
FBCP
2FBCP
HBCP
H-F
H-CN
HCtN
H-F
H-CN
HCtN
H-F
H-CN
HCtN
0.259
0.264
0.455
0.284
0.268
0.455
0.230
0.257
0.455
-1.486
-0.974
-0.305
-1.821
-0.990
-0.301
-1.082
-0.937
-0.312
-0.479
-0.273
-0.816
-0.557
-0.278
-0.816
-0.385
-0.264
-0.815
exception is found for the double-bonded H2OO:::HCN complex, in which the interaction formed between one of the H
atoms of the ylide and the N atom of the hydrogen cyanide
(see Figure 2) shows negative HBCP and a very short HN
distance, implying a very strong HB.
In the methylated ylide series, a unique interaction was found
between the negatively charged atom of the ylide molecules
and the HB donors. In all the complexes formed with HCCH,
the interaction can be described as a standard HB (FBCP 10-2
au, 2FBCP and HBCP positive). However, in all the complexes
formed with HF, the HBCPs of the HB interaction were negative,
the values of the FBCP were very large, and the YH distances
very short (see Table 4), indicating that the HB interaction is
very strong. It could be considered that maybe the proton had
already been transferred and that the protonated ylide was
interacting with the F atom. However, the electron densities,
2FBCP, and HBCP of the corresponding H-F bonds within the
complexes (see Table 5) indicate that those are covalent bonds.
In the complexes with HCN, both situations are found. The
interaction established in the Me2OOHCN complex shows
FBCP around 10-2 au, and positive 2FBCP and HBCP, whereas
in the complexes with Me2ONH and Me3NNH the 2FBCP values
are positive and the HBCP values are negative and very small.
Again, the electron density characteristics of the bonds of the
HCN molecules within the complexes correspond to covalent
bonds (see Table 5). Both situations are illustrated in Figures 4
and 5.
Due to the distinctive nature of ylides, which are neutral
species with two charged atoms, the variation in their atomic
charges when the HB complexes are formed has been studied.
The AIM atomic charges for the heavy atoms of the ylides
(isolated and within the complexes) and those for the HB donors
Rozas et al.
Table 7. AIM Atomic Charges Calculated for All the Atoms of
the HB Donors, Isolated and within the HB Complexes, at the
MP2/6-311++G** Level of Theory
N(H) N(C)
HCCH isolated
(H2)ON(H)
(H2)OO
(H3)NN(H)
(Me2)ON(H)
(Me2)OO
(Me3)NNH
(Me3)NCH2
HCN
HF
Figure 5. Contour plot of the electron density of the Me2OOHCN
complex calculated at the MP2/6-311++G** level.
Table 6. AIM Atomic Charges Calculated for the Ylide Atoms in
the Isolated Monomers and within the HB Complexes, at the
MP2/6-311++G** Level of Theory
N(X-) N(X-) N(-Y) N(-Y)
X-Y
(H2)O-N(H)
isolated
HCN
HCCH
isolated
HCN
HCCH
isolated
HCN
HCCH
8.928
8.921
8.937
8.776
8.763
8.781
7.668
7.682
7.684
isolated
HF
HCN
HCCH
(Me2)O-O
isolated
HF
HCN
HCCH
(Me3)N-N(H) isolated
HF
HCN
HCCH
(Me3)N-C(H2) isolated
HCCH
8.815
8.782
8.801
8.808
8.665
8.629
8.646
8.653
7.668
7.698
7.679
7.676
7.955
7.958
(H2)O-O
(H3)N-N(H)
(Me2)O-N(H)
-0.007
0.009
-0.013
0.005
0.014
0.016
-0.033
-0.014
-0.007
-0.036
-0.019
-0.012
0.030
0.011
0.008
0.003
7.576
7.598
7.588
8.499
8.528
8.526
7.761
7.767
7.774
7.657
7.639
7.670
7.669
8.547
8.528
8.551
8.552
7.776
7.764
7.789
7.779
6.101
6.092
0.022
0.012
0.029
0.027
0.006
0.013
-0.018
0.013
0.012
-0.019
0.004
0.005
-0.012
0.013
0.003
-0.009
isolated
(H2)ON(H)
(H2)OO
(H3)NN(H)
(Me2)ON(H)
(Me2)OO
(Me3)NNH
isolated
(Me2)ON(H)
(Me2)OO
(Me3)NNH
0.843
0.757
0.754
0.702
0.732
0.741
0.714
0.719
6.157
6.169
6.160
6.201
6.191
6.191
6.198
6.196
N(C) N(H)
6.157
6.215
6.209
6.260
6.237
6.227
6.259
6.269
Qa
0.843
0.833 -0.026
0.828 -0.049
0.854
0.017
0.857
0.017
0.854
0.013
0.862
0.033
0.862
0.046
N(H)
N(C)
N(N)
Qa
0.779
0.674
0.755
0.617
0.666
0.673
0.642
5.231
5.264
5.096
5.333
5.279
5.271
5.298
7.990
8.101
8.130
8.122
8.105
8.093
8.123
0.039
-0.019
0.072
0.050
0.037
0.063
N(H)
N(F)
Qa
0.288
0.317
0.292
0.344
9.712
9.813
9.806
9.816
0.130
0.098
0.160
EI ) -106.001 + 149.589(XH/XY)
r2) 0.94, n ) 32, SD ) 2.37
demonstrates a sufficiently good regression coefficient taking
into account the differences in the systems compared.
Other regressions were tested, such as EI vs d(XH) or EI vs
d(XY). However, their results were worse than that of EI vs
XH/XY. These distance variables have been used by many other
authors to explain the strength of HBs.
Besides, the introduction of a second independent variable
(the XHsY angle) was tested only for the set of complexes
calculated in this paper. Yet, this second variable did not
improve greatly the regression coefficient:
EI ) -98.248 + 138.898(XH/XY)
r ) 0.92, n ) 12, SD ) 1.41
2
JA0017864
(30) Pan, Y.; McAllister, M. A. J. Am. Chem. Soc. 1997, 119, 7561.