Detection of Infectious Bronchitis Virus
Detection of Infectious Bronchitis Virus
Detection of Infectious Bronchitis Virus
23 / 2000, page 21
Figure 1: Average virus excretion by M41 infected reproducible and specific product. A disadvantage of
unvaccinated broilers (Avian Pathology, 27, using a Mab to detect IBV antigen, or more accurately,
464-471) a certain epitope, is that a mutation of only one nucle-
otide, resulting in a different amino acid in the epitope
with which the Mab reacts, can prevent binding of the
Mab to that epitope. Depending on the Mab used, this
would suggest either that the strain is not IBV or is not of
that serotype. This problem can be reduced by choosing
Mabs against highly conserved or essential areas of the
virus, or by using a mixture of Mabs. The risk, that one
missing or changed epitope will cause a false negative
result in an antiserum-based test is much smaller, when
polyclonal antisera are directed against more epitopes.
bearing cells as well as general tissue morphology. Also, tions, making a clear classification not always possible.
evaluation of the slides can be done in day-light using
a normal microscope, and storage of the slides is easy Classification systems are divided into two major groups:
because of the stability of the staining, in contrast with functional tests, that regard the biological function of
IFA, where the staining fades when not stored dark and a virus, and non-functional tests that look at the viral
frozen. Disadvantages of IPA compared to IFA are that genome. Typing by functional tests results in immu-
the technique is more laborious, takes a few days and is notypes or protectotypes, and antigenic (serotype or
sensitive to non-specific background staining by endog- epitope) types. Tests that look at the genome result in
enous peroxidase that is naturally present in the sample. genotypes. The preferred typing system depends on the
This endogenous peroxidase has to be removed during goal (e.g. selection of vaccination programmes, or epide-
the process of performing the IPA. miology), available techniques, experience and costs.
Antigen ELISA
Immunotypes or protectotypes
Because of the high amounts of virus that are needed for
detection by antigen ELISA, the sensitivity for detecting
Grouping of IBV strains into immunotypes (Cunningham,
IBV antigen directly in chicken organs is low. Elisa is more
1975) or protectotypes (Lohr, 1988; Hinze, et al., 1991) is
suited as confirmation test for detecting IBV antigen in
the most important system from a practical point of view,
allantoic fluid of inoculated eggs, especially when a large
because it provides direct information about the efficacy
number of samples has to be tested.
of a vaccine. Strains that induce protection against each
other, belong to the same immuno- or protectotype. The
number of protectotypes that exists is unknown, but
Detection of the IBV genome
cross-challenge experiments in chicken tend to reduce
the number of protectotypes types compared to sero-
Techniques that detect all or part of the IBV genome may
types, presumably because they are measuring the
be used for IBV detection. Although one- and two-step
complete immune response and not just a part of it
procedures are reported, the detection of genomic RNA
(McMartin, 1993).
is usually a three step procedure. The first step is repli-
cation of the virus from the (field) sample using embryo-
To determine the protectotype of a strain, a cross-immu-
nated eggs or TOCs. Subsequently, the genomic RNA is
nisation study (CIS) has to be performed. A CIS is labour-
translated by reverse transcriptase (RT) into copy-DNA
intensive, expensive and requires many animals and
(cDNA) and multiplied many times by polymerase chain
isolation facilities. A more economical in vitro alternative
reaction (PCR). The last step is classifying the strain into
for the CIS may be the cross-immunisation test (CIT). In a
a genotype using a third technique (see later).
CIS, vaccinated birds are challenged in different groups
with different strains. When performing a CIT, the chal-
Reverse transcriptase polymerase chain reaction lenge of vaccinated chickens is performed on TOCs of
(RT-PCR) those birds, testing the tracheal cross-immunity. Because
one bird provides many tracheal rings, each bird can be
A technique increasingly used is the reverse transcriptase
challenged with a number of different isolates. Although
polymerase chain reaction (RT-PCR). The sensitivity of
TOCs simulate the chicken better than most in vitro
the RT-PCR is usually low when performed directly on
methods, there might be differences. When the challenge
organs. Therefore, IBV is often first multiplied in embryo-
is done in chickens, the whole immune system is avail-
nated eggs or TOCs before the RT-PCR is performed.
able, whereas in TOCs, this is probably not the case.
The RT-PCR product is to be identified as originating from
Whether CIT is really a reliable alternative for the CIS
IBV by another technique such as sequencing, restriction
needs further work, preferably in comparative studies
enzyme fragment length polymorphism (RFLP), or hybridi-
using different strains of different tropism.
sation. Further, use of appropriate controls to check the
performance of the test and possible cross-contamina-
tions are required.
Antigenic types
Serotypes
Strain classification
The classical functional typing system is serotyping by
Typing of IBV strains is useful for implementation of control VN-test, which is based on the reaction between an IBV
measures, for research purposes and for understanding strain and chicken-induced IBV serotype-specific anti-
the epidemiology and evolution of IBVs. Classification of bodies.
strains is hampered by the lack of standardisation of tests
A disadvantage of serotyping is the lack of standardisa-
used world wide, use of different names for the same type
tion between the different systems and users. The results
of virus, the number of different test systems available
of different laboratories are therefore not always compa-
and, maybe most important, the nature of this virus. A
rable.
typing system suggests that a strain clearly belongs to
only one type. However, the IBV genome consists of
Epitope types (monoclonal antibody)
single stranded RNA with a high mutation frequency.
Molecular studies with IBV have shown that new IBV By incorporating a Mab into the test, it is possible to
serotypes and genotypes can emerge as a result of check whether a certain epitope or a number of epitopes
only a very few changes or mutations in the amino acid is present on a strain. When this (these) epitope(s)
sequence of the spike gene, while the major part of the is (are) related to a certain serotype, it can be used
virus genome remains unaltered. Also, several workers to produce a serotype-specific test such as antigen-
demonstrated or provided circumstantial evidence that ELISAs or IFAs. Use of serotype-specific Mabs, which are
IBV can undergo recombination during mixed infections. directed against hypervariable parts of the S1 protein,
As a result, IBV strains may show multiple cross-reac- has a certain risk of false-negative results. A mutation in
No. 23 / 2000, page 24
the epitope to which the Mab is directed, does not neces- tion of the virus. The correlation between RFLP pattern
sarily mean that the strain has changed to another sero- and serotype can be high, but as reported by Hein et
type. So, an IBV virus that does not react with a panel al. (1998), different isolates, typed by RFLP as belonging
of serotype-specific Mabs is preferably re-tested by a to the same genotype, can be of different serotypes or
different technique to check whether another serotype is protectotypes. Therefore, it is recommended that where
involved, or whether possibly one of the epitopes was there is suspicion in the field that the RFLP-genotype
changed by mutation and therefore missed by the panel of recent isolates does not provide accurate information
of Mabs that was used. about the true antigenic nature of IBV isolates, conven-
tional testing and especially in vivo studies are also
Genotypes used.
Grouping of strains based on genetic characterisation of
c: RNase T1 fingerprinting analysis
(a part of) the genome (or its c-DNA) results in genotypes.
Methods include sequencing part(s) of the genome or After multiplication of IBV, extracted and purified viral
determining the position of enzyme cleavage sites (RFLP, RNA is digested with ribonuclease (RNase) T1, resulting
RNase T1 fingerprinting). Genomic information is objec- in oligonucleotides. After staining, the oligonucleotides
tive and provides essential information for epidemiolog- are resolved on two-dimensional gel electrophoresis,
ical studies. A disadvantage of genotyping for use in the resulting in a fingerprint of the genome. The fingerprint
field, is that direct translation of information about a part can be compared with fingerprints of known strains.
of the genome of an IBV strain to biological function or This complex and labour-intensive technique is hardly
antigenicity of the virus is not possible or not without used anymore for IBV because it does not work well
risk. Isolates of the same serotype or protectotype can for genomes with less than 95 % homology (what is not
differ substantially in some genes (Cavanagh et al., unusual for IBV) and shows poor correlation between
1992a), while different serotypes or protectotypes can genotype and serotype.
have remarkably high similarity between their genomes
(Clewley et al., 1981, Kusters et al., 1987; Williams et
al., 1992; Cavanagh et al., 1992a, 1992b). Although Detection of antibodies
high correlations between the genotype and serotype
of strains have been reported, other papers present IBV infections can be diagnosed by detecting the appear-
conflicting data about strains genotype and serotype or ance of, or rise in, antibody titre of IBV specific anti-
even protectotype. bodies. Generally, in order to be able to correlate a
clinical problem with an IBV infection, paired sampling is
Therefore, for practical use in the field, exclusive use
required. The first sample is taken at onset of disease,
of genotyping methods is not recommended. Especially
and the second sampling several weeks later. The paired
when there is suspicion in the field that the genotype
sera should be tested in the same test run, to prevent
of recent isolates does not provide accurate information
wrong conclusions caused by day-to-day variation of the
about the true antigenic nature of IBV isolates, conven-
tests. At least a four-fold rise in titre is required for a posi-
tional testing (serotyping) and especially in vivo studies
tive diagnosis.
are required.
Factors influencing the success of IBV antibody detec-
a: sequencing
tion
Sequencing and subsequent comparison of the amino
acid sequences of viral proteins is a very useful instru- Interpretation of serological results can be complicated
ment to help locating conserved domains in proteins that by a number of factors including presence of immunity
might be essential for their structure and function and at time of vaccination/infection, cross-reactions between
for epidemiological studies. Based on sequence data, serotypes, and occurrence of new or unexpected IBV
a phylogenic tree can be made, revealing the genomic strains. Furthermore, lack of attempts to standardise tests
relatedness between different strains. However, it must be between different laboratories adds to the difficulty in
remembered that the place of a certain strain in a phyl- interpreting results.
ogenic tree can differ depending on the genotyping
techniques used, or on which part of the genome is Presence of immunity at time of vaccination/infection
analysed. Sequence data only provide information about
A very important factor that influences the degree of
the primary structure (sequence of amino acids) of the
humoral response after an infection or vaccination is the
protein. Detected differences in sequence of two strains
immunity derived from previous vaccination or infection
can not be translated to differences in antigenity or
(Gazdzinski et al., 1977; Macdonald et al., 1981; Darby-
biological function. Also the occurrence of recombina-
shire & Peters, 1984, 1985; De Wit et al., 1997). The
tions between different IBV strains hampers the transla-
degree of humoral response after infection in vaccinated
tion of data of a genotype to a serotype or protectotype.
chickens can be decreased and slowed down compared
to the humoral response of unprotected birds (Figure 3
b: restriction enzyme fragment length polymorphism
and 4). As a result, the sensitivity of antibody detecting
(RFLP)
tests can be much lower in vaccinated chickens as
After amplification of cDNA of the S1 gene by PCR compared to unvaccinated chickens.
and purification by electrophoresis, the PCR product is
digested with restriction enzymes that cut cDNA into frag- Cross-reactions between serotypes
ments at certain highly specific cleavage sites. The
A complicating factor in serotyping an IBV infection by
RFLP patterns are then compared with patterns of repre-
serology is the cross reaction which may occur after an
sentatives of known serotypes. This test can provide a
infection. These cross reactions especially occur in birds
fast diagnosis, including typing of the virus. However,
that had multiple contacts (e.g. vaccinations) with IBV
cleavage sites of enzymes used in RFLP are not related
(Table 1), particularly when more than one serotype is
and cannot be translated to biological or antigenic func-
involved (Gelb & Killian, 1987; Karaca & Naqi, 1993; De
No. 23 / 2000, page 25
Figure 3: Average HI and ELISA titre after D8880 Wit et al., 1997).
infection of unvaccinated broilers
For interpreting serological results, these heterologous
cross reactions in serotype-specific tests have to be
differentiated from the homologous response. When the
cross reactions are high, as may be expected in older
birds that have been vaccinated (and probably infected)
several times with different serotypes, interpretation of the
serological data can be very difficult or even impossible.
In those conditions, subjectivity of the interpreting person
is a real danger for the quality of the diagnosis. Obvi-
ously, a particular IB-serotype can only be identified if that
serotype is included in the panel of IBVs tested. If not,
the highest cross reaction may be misinterpreted as the
serotype involved.
Group-specific tests
Table 1: Mean VN titres after an IBV infection in non-vaccinated and vaccinated broilers (Avian Pathology,
A1 - - -b - - - - -
B1 - - - - - - - - - -
A2 - M41 - 7.6 - - - - - -
B2 - M41 - 8.3 - - - - -
B5 - D274 - - - 7.1 - - - -
B6 - D1466 - - - - - 9.5 - -
B7 - D8880 - - - - - - - 9.9