SEM TEM Chapter
SEM TEM Chapter
SEM TEM Chapter
INTRODUCTION
A microscope can be defined as an instrument that uses one or several lenses to form an
enlarged (magnified) image. The term microscope comes from the Greek "mikros" =
small; and "skopos" = to look at. Microscopes can be classified according to the type of
electromagnetic wave employed and whether this wave is transmitted or not through the
specimen. In the transmission microscopes the electromagnetic wave passed through the
specimen differentially refracted and absorbed. The most common type of transmission
(TEM, Fig. 1A) where the source of illumintation is an electron beam. Electron beams
can also be passed over the surface of the specimen causing energy changes in the
sample. These changes are detected and analyzed to give an image of the specimen.
This type of microscope is called Scanning Electron Microscope (SEM, Fig. 1B). The
optical paths of the illumination beam in light microscopes and TEMs are nearly
identical. Both types of microscopes use a condenser lens to converge the beam onto the
sample. The beam penetrates the sample and the objective lens forms a magnified
image, which is projected to the viewing plane. SEM is nearly identical to TEM
regarding the illumination source and the condensing of the beam onto the sample.
However, significant features differ SEM and TEM. Before contacting the sample, the
SEM beam is deflected by coils that move the beam in scan pattern. Then a final lens
(which is also called objective lens) condense the beam to a fine spot on the specimen
surface. The signals produced by the effect of the beam on the sample are interpreted by
of different ones that offer unique possibilities to gain insights into morphology,
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structure and composition of a specimen. The observable samples include biological
various imaging and spectroscopic methods acopled to the basic electron microscopy
instrumentation
Hans Busch theoretically showed in 1927 that electron beams can be focused in an
inhomogeneous magnetic field. He also predicted that the focal length of such a
magnetic electron lens could be changed continuously by varying the coil current. In
1931 Ernst Ruska and Max Knoll confirmed this theory constructing a magnetic lens of
the type that has been used since then in all magnetic electron microscopes leading to
the construction of the first transmitted electron microscope instrument. The main
limitation of their microscope was that electrons were unable to pass through thick
specimens. Thus it was impossible to utilize the instrument to its full capacity until the
diamond knife and ultra-microtome were invented in 1951. In 1938, Manfred von
(1889-1982), J. Hillier and R. L. Zinder developed in 1942 the first scanning electron
microscope (SEM) without using the transmitted electron signal. Charles Oatley and his
incorporated to subsequent SEM models that finally in 1964 resulted in the first
Binning and H. Rohrer, who developed the Scanning Tunneling Microscope) obtained
Nobel Prize.
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2. FUNDAMENTALS OF ELECTRON MICROSCOPY
Electron microscopy is based on the use of a stable electron beam that interacts with the
matter. Electrons are elementary particles with negative charge. These particles were
discovered by J. J. Thompson in 1897 (Nobel Prize 1906), who deduced that the
constituents of the atom and over 1000 times smaller than a hydrogen atom.
The possibility to develop a microscope that utilized electrons as its illumination source
began in 1924 when De Broglie (Nobel Prize 1929) postulated the wave-particle
dualism according to which all moving matter has wave properties, with the wavelength
λ = h / p = h / mv
It means that accelerated electrons act also as waves. The wavelength of moving
electrons can be calculated from this equation considering their energy E. The energy of
E = eV = m0v2/2
certain energy:
p = m0v = (2m0eV)1/2
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At the acceleration voltages used in TEM, relativistic effects have to be taken into
λ = h / [2m0eV (1 + eV/2m0/c2)]1/2
Resolution in a microscope, defined as the ability to distinguish two separate items from
Vacc/ kV B / pm A / pm
Electron waves in beams can be either coherent or incoherent. Waves that have the same
wavelength and are in phase with each other are designated as coherent. On contrast,
beams comprising waves that have different wavelengths or are not in phase are called
incoherent. Electrons accelerated to a selected energy have the same wavelength. The
specimen, electron waves can form either incoherent or coherent beams which interact
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with each other producing either constructive or destructive interferences that can lead
extinguish waves.
multitude of signals (Fig. 2). The different types of electron-specimen interaction are the
basis of most electron microscopy methods. These effects can be classified into two
In the elastic interactions, no energy is transferred from the electron to the sample and
the electron leaving the sample still conserves its original energy (E el = E0). An example
of this is the case of the electron passing the sample without any interaction which
contributes to the direct beam leaving the sample in direction of the incident beam (Fig.
2). In thin samples, these signals are mainly exploited in TEM and electron diffraction
methods, whereas in thick specimens backscattered electrons are the main elastic signals
studied.
electrons to the sample, causing different signals such as X-rays, Auger or secondary
electrons or cathodoluminescence.
Figure 3 shows the electron energy spectrum of several signals produced during the
interaction of an electron beam with a specimen. Low-energy peaks, such as the large
those of the backscattered electron (BSE) distribution correspond to cases where the
primary electron loses no energy or, to be accurate, only a negligible amount of energy
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The volume of material affected by the electron beam depends on many factors. The
controlling the electron penetration depth and the interaction volume are the angle of
incidence, the current magnitude and the accelerating voltage of the beam, as well as the
average atomic number (Z) of the sample. The resulting excitation volume is a
hemispherical to jug-shaped region with the neck of the jug at the specimen surface
(Fig. 2). For an electron beam incident perpendicular to the sample, electron penetration
When an electron penetrates into the electron cloud of an atom is attracted by the
positive potential of the nucleus deflecting its path towards the core. The Coulombic
F = Q1Q2 / 4πε0r2
with r being the distance between the charges Q 1 and Q2 and ε0 the dielectric constant.
The closer the electron comes to the nucleus, the larger is F and consequently the
scattering angle (Fig. 4). Scattering angles range up to 180°, but average about 5°.
Backscattered electrons
In some cases, even complete backscattering can occur in an individual interaction (Fig.
5A). In thick samples, many incident electrons undergo a series of such elastic events
that cause them to be scattered back out of the specimen (Fig. 5B). Backscattered
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electrons (BSE) are high-energy primary electrons that suffer large angle (> 90°)
scattering and re-emerge from the entry surface of a specimen. Individual backscattering
events are generally elastic, where a negligible amount of energy is lost by the primary
electron in the process. Most BSE have energies slightly lower than that of the primary
electron beam, E0, but may have energies as low as ~50 eV. Because of its dependence
on the charge, the force F with which an atom attracts an electron is stronger for atoms
containing more positives charges. Thus, the Coulomb force increases with increasing
atomic number Z of the respective element. Therefore, the fraction of beam electrons
backscattered from a sample (η) depends strongly on the sample's average atomic
number, Z (Fig. 6). However, in thick samples it must be taken into account that an
electron that has undergone inelastic scattering may subsequently escape the sample
surface as a BSE, and thus the energy of a backscattered electron depends on the
number of interactions that it has undergone before escaping the sample surface.
When electrons are scattered by atoms in a regular array, collective elastic scattering
phenomenon, known as electron diffraction (ED), occur. The incoming electron wave
interact with the atoms, and secondary waves are generated which interfere with each
to a diffraction pattern (Fig. 2). The scattering event can be described as a reflection of
the beams at planes of atoms according to the Bragg law, which gives the relation
nλ = 2dsinΘ
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Since the wavelength λ of the electrons is known, interplanar distances can be
Most electrons of the incident beam follow complicated trajectories through the sample
material, losing energy as they interact with the specimen atoms producing a number of
interactions. Some of the most significant effects are shown in figure 2. Several
interaction effects due to electron bombardment emerge from the sample and some,
electrons with valence electrons of atoms in the specimen causing the ejection of the
electrons from the atoms (Fig. 7) which can move towards the sample surface through
elastic and inelastic collisions until it reaches the surface, escaping if its energy exceed
the surface work function, Ew. The strongest region in the electron energy spectrum is
due to secondary electrons (SE), which are defined as those emitted with energies less
The mean free path length of secondary electrons in many materials is ~1 nm (10 Å).
Although electrons are generated in the whole region excited by the incident beam, only
those electrons that originate less than 1 nm deep in the sample are able to escape giving
rise to a small volume production. Therefore, the resolution using SE is effectively the
same as the electron beam size. The shallow depth of production of detected secondary
electrons makes them very sensitive to topography and they are used for scanning
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The fraction of secondary electrons produced, δ, is the average number of SE produced
Characteristic X-rays
When an electron from an inner atomic shell is displaced by colliding with a primary
electron, it produces a vacancy in that electron shell. In order to re-establish the proper
balance in its orbitals, an electron from an outer shell of the atom may fall into the inner
shell and replace the spot vacated by the displaced electron. In doing so this falling
electron loses energy and this energy is referred to as X-rays. The characteristic X-ray
of a given element can be detected and identified, therefore information about the
Auger Electrons
Auger electrons are produced when an outer shell electron fills the hole vacated by an
inner shell electron that is displaced by a primary or backscattered electron. The excess
energy released by this process may be carried away by an Auger electron. Because of
their low energies, Auger electrons are emitted only from near the surface. The energy
of an Auger electron can be characteristic of the type of element from which it was
released and thus Auger Electron Spectroscopy can be performed to obtain chemical
Cathodluminescence
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The interaction of the primary beam with the specimen in certain materials release
excess energy in the form of photons. These photons of visible light energy can be
detected and counted forming an image using the signal of light emitted.
3. INSTRUMENTATION
All electron beam instruments are built around an electron column containing an
electron gun that produces a stable electron beam and a set of electromagnetic lenses
that control beam current, beam size and beam shape, and raster the beam (in the SEM
and STEM cases, see Fig. 1). Electron microscopes also have a series of apertures
(micron-scale holes in metal film) by which the beam passes through controlling its
properties. Electron optics are a very close analog to light optics, and most of the
rays of light and simply the electron optical components as their optical counterparts.
The electron gun is located at the upper part of the column and its purpose is to provide
electrons to form a stable beam of electrons of adjustable energy. This is carried out by
allowing electrons to escape from a cathode material. The total energy required for a
E=Ew+Ef
where, E is the total amount of energy needed to remove an electron to infinity from the
lowest free energy state, Ef is the highest free energy state of an electron in the material
(which must be achieved), and Ew is the work function or work required to achieve the
difference.
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Electron beams can be produced by two different electron gun types (Fig. 8):
thermoionic guns (electron emission through heating) and Field Emission Guns
In the thermionic sources (Fig. 8A), electrons are produced by heating a conductive
material to the point where the outer orbital electrons gain sufficient energy to overcome
the work function barrier and escape. Most of the thermoionic electron guns have a
The cathode is a thin filament (about 0.1 mm) wire bent into an "V" to localize emission
at the tip, yielding a coherent source of electrons emitted from a small area which in
many cases is not perfectly circular. There are two main types of thermionic sources:
tungsten metal filaments and LaB6 crystals. These two types of sources require vacuums
of ~10-5 and ~10-7 torr, respectively. Tungsten filaments resist high temperatures without
melting or evaporating, but they have a very high operating temperature (2700 ºK),
which decreases their lifetime due to thermal evaporation of the cathode material. The
2500 K. Above 2500 K, the electron flux will increase essentially In an exponential
mode with increasing temperature, until the filament melts at about 3100 K. However,
in practice, the electron emission reaches a plateau termed saturation. Proper saturation
is achieved at the edge of the plateau; higher emission currents serve only to reduce
filament life. LaB6 cathodes yield higher currents at lower cathode temperatures than
tungsten, exhibiting 10 times the brightness and more than 10 times the service life of
tungsten cathodes. Moreover, its emission region is smaller and more circular than that
of tungsten filaments, which improves the final resolution of the electron microscope.
However, LaB6 is reactive at the high temperatures needed for electron emission.
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localize the cloud of primary electrons emitted in all directions from the entire heated
filament at one spot at the tip above an aperture in the Wehnelt. The filament must by
centered to the proper distance in relation to the opening of the Wehnelt cap. Otherwise,
The electrons emitted from the cathode-Wehnelt assembly are drawn away by the anode
plate, which is a circular plate with a hole in its center. A voltage potential between the
cathode and the anode plate is used to accelerate the electrons down the column, which
is known as the accelerating voltage. Thus, the anode plate serves to condense and
In the field emission guns (Fig. 8B), the cathode consists of a sharp metal tip (usually
Tungsten) with a radius of less than 100 nm. A potential difference (V 1= extraction
voltage) is established between the first anode and the tip. The result is an electric field,
concentrated at the tip, which produces electron emission (emission current). The
potential difference between the tip and the second grounded anode determines the
accelerating voltage (V0) of the gun. The higher the accelerating voltage the faster the
electrons travel down the column and the more penetrating power they have.
There are two types of field emission guns: cold and thermally assisted. Both types of
field emission require that the tip remain free of contaminants and oxide and thus they
require ultra high vacuum conditions (10-10 to 10-11 Torr). In the cold FEG the electric
field produced by the extraction voltage lowers the work function barrier and allows
electrons to directly tunnel through it and thus facilitating emission. The cold FEGs
must periodically heat their tip to be polished of absorbed gas molecules. The thermally
assisted FEG (Schottky field emitter) uses heat and chemistry (nitride coating) in
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3.2. Electromagnetic Lens
Electromagnetic lenses are made of a coil of copper wires inside several iron pole pieces
(Fig. 9). An electric current through the coils creates a magnetic field in the bore of the
pole pieces. The rotationally symmetric magnetic field is strong close to the bore and
becomes weaker in the center of the gap. Thus, when an electron beam passes through a
electromagnetic lens, electrons close to the center are less strongly deflected than those
passing the lens far from the axis. The overall effect is that a beam of parallel electrons
is focused into a spot. In a magnetic field, an electron experiences the Lorentz force F:
F = -e (E + v x B)
|F| = evBsin(v,B)
electrons
The focusing effect of a magnetic lens therefore increases with the magnetic field B,
which can be controlled via the current flowing through the coils. As it is described by
the vector product, the resulting force F is perpendicular v and B. This leads to a helical
trajectory of the electrons and to the magnetic rotation of the image (Fig. 9).
with light. Thus, very similar diagrams can be drawn to describe the respective ray
paths. Consequently, the imaginary line through the centers of the lenses in an electron
microscope is called optical axis as well. Furthermore, the lens equation of light optics
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Magnification M = v/u; f: focal length; u: object distance; v: image distance
As in glass lenses, magnetic lenses have spherical (electrons are deflected stronger the
more they are off-axis) and chromatic aberrations (electrons of different wavelengths
are deflected differently). Moreover, the iron pole pieces are not perfectly circular, and
this makes the magnetic field deviating from being rotational symmetric. The
astigmatism of the objective lens can distort the image seriously. Thus, the astigmatism
must be corrected, and this can fortunately be done by using octupole elements, so-
called stigmators. These stigmators generate an additional field that compensates the
To reduce the effects of spherical aberration, apertures are introduced into the beam path
(see Fig. 1). It must be taken in account that the introduction of apertures reduces beam
1. Beam formation and focusing (condenser lenses in TEM and SEM and objetive lens
in SEM):
Condenser lenses are located at the upper part of the column (Fig. 1A and 1B) ensuring
that the electron beam is symmetrical and centered as it passes down the electron
column of the microscope. These lenses allow making variations of the beam intensity,
controlling the amount of current that passes down the rest of the column. This is
accomplished by focusing the electron beam to variable degrees onto a lower aperture
of fixed size. The sharper the focus, the less of the beam intercepted by the aperture and
the higher the current. Moreover, in the TEM, condenser lenses focus the illuminating
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In the SEM, the objective, or "probe-forming", lens is located at the base of electron
column just above sample (Fig. 1B). The beam is divergent after passing through the
condenser lens and must be refocused. The objective lens focuses the electron beam
onto the sample and controls its final size and position.
An objective aperture of variable size is also located under the lens. Decreasing the
diameter of the aperture will decrease lens aberrations, increasing resolution, and
decreases the probe current and the convergence angle of the beam.
Hosted within it are scanning coils. Scanning (or "deflector") coils raster the beam
across the sample for textural imaging. The coils consist of four magnets oriented
radially that produce fields perpendicular to optical axis of the electron beam. The beam
The TEM has a complex imaging system located under the sample chamber which
consists of a group electromagnetic lenses. The objective lens focuses the beam after it
passes through the specimen and forms an intermediate image of the specimen.
Electrons, which come from the condenser system of the TEM, are scattered by the
sample, situated in the object plane of the objective lens. Electrons scattered in the same
direction are focused in the back focal plane, and, as a result, a diffraction pattern is
formed there. Electrons coming from the same point of the object are focused in the
image plane.
An objective aperture is situated within the beam path just below the objective lens,
allowing select only some beams to contribute to the formation of the image.
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Subsequent lenses (eye piece/intermediate and projector lenses) magnify portions of the
Samples involved in the TEM and SEM techniques have different characteristics. TEM
samples are usually small and must be as thin as possible, whereas, in contrast, SEM
samples are far more variable ranging from small specimens, similar to those observed
in the TEM, to large pieces of specimens. The sample chambers of the two instruments
reflect this difference. TEM has a sample chamber just large enough to permit
observation of specimens included in a ring or grid of few mm. In contrast, SEM has a
sample chamber that permits large and complex movements of the sample stage; for
example, the SEM can accommodate samples up to 200 mm in diameter and ~80 mm
high. Moreover, SEM sample chambers are designed to accommodate a wide set of
signal detectors that allow to develop their imaging and analytical facilities.
electrons are detected using diodes, acting as semiconductors, located at the base of the
objective lens (Fig. 10). When backscattered electrons strike these semiconductors
chips, imparting energy, a current flows. The size of the current (signal) is proportional
to the number of electrons hitting the semiconductor. The BSE detectors are sensitive to
The BSE detector systems commonly consist of either two semicircular plates or four
semiconductor plates mounted at the base of the bottom of the electron column.
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3.4.2 Secondary electron detection
Due to the low energy of the secondary electrons (Fig. 3) emitted from the sample in all
directions, in a first stage of the detection process, they have to be drawn from the
sample surface toward the detector. They are gathered by a charged collector grid,
which can be biased from -50 to +300 V (Fig. 11). Secondary electrons are then
sent to further electrical amplifiers, which increase the electrical signal thus increasing
brightness.
SEM has the added capability to also work with a relatively poor vacuum in the
specimen chamber. Air (or another gas) is admitted into the sample chamber to
neutralize the build-up of the negative electrostatic charge on the sample. In "low-
vacuum (LV) mode”, the sample chamber pressure, typically 20-30 Pa, is maintained at
a specifiable value by a separate extra pump with a large foreline trap. The electron
column is separated from the chamber by a vacuum orifice (aperture) that permits the
mode allows the study of samples with poor or no electrical conductivity. Normally,
these materials would be either coated with an electrically conductive coating, which
takes time and hides the true surface, or studied at low voltages, which do not give
An environmental SEM utilizes relatively low vacuum pressures (up to 50 torr ~ 6700
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Pa) not only to neutralize charges, but also to provide signal amplification. The electron
A positively charged detector electrode is placed at the base of the objective lens at the
top of the sample chamber (Fig. 12). Electrons emitted from the sample are attracted to
the positive electrode, undergoing acceleration. As they travel through the gaseous
environment, collisions occur between electrons and gas particles, producing more
electrons and ionization of the gas molecules and effectively amplifying the original
identical to that which occurs in a gas-flow X-ray detector. Positively charged gas ions
are attracted to the negatively biased specimen and offset charging effects.
Image formation in the TEM is carried out by the objective lens, which
physically performs:
- A Fourier transform (FT, Fourier analysis) that creates the diffraction pattern of the
- an inverse FT (Fourier synthesis) that makes the interference of the diffracted beams
Therefore, the selection of the focusing plane and the beams allowed to pass through the
aperture of the objetive lens play critical roles in the TEM image formation.
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The Fourier transform of periodic structures give rise to sharp spots at well-defined
positions in the resulting diffraction pattern. Each set of parallel lattice planes of the
periodic structure is represented by spots which have a distance of 1/d (d: interplanar
spacing) from the origin and which are perpendicular to the reflecting set of lattice
planes. The diffraction can be described in reciprocal space by the Ewald sphere
construction (Fig. 13). A sphere with radius 1/λ is drawn through the origin of the
reciprocal lattice. For each reciprocal lattice point that is located on the Ewald sphere
surface, the Bragg condition is satisfied and diffraction arises. Such diffracton patterns
The focus in the image plane of the electrons coming from the same point of the object
produces images whose points have different contrast. Basic contrast mechanisms in
TEM are controlled by the local scattering power of the sample. The interaction of
electrons with heavy atoms having a high charge (Q) is stronger than with light atoms
so that areas in which heavy atoms are localized appear with darker contrast than those
with light atoms (mass contrast). In thick areas, more electron scattering events occur
and thus thick areas appear darker than thin areas (thickness contrast). In particular, this
In the bright field (BF) mode of the TEM (Fig. 14), the aperture placed in the back focal
plane of the objective lens allows only the direct beam to pass. In this case, the image
results from a weakening of the direct beam by its interaction with the sample and
therefore mass-thickness contrast contribute to image formation: thick areas and areas
enriched in heavy atoms appear with darker contrast. If a specimen with crystalline
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contribute to the reflections in the diffraction pattern, then only a few electrons pass
without interactions and therefore this specimen appears with dark contrast in the BF
image (diffraction contrast). In real specimens, all contrast mechanisms, namely mass-
images sometimes difficult. In dark field (DF) images (Fig. 14), the direct beam is
blocked by the objective lens aperture while one or more diffracted beams are allowed
to pass, resulting an image where the specimen is in general weakly illuminated and the
The lattice images are formed by the interference of various diffracted beams. A larger
objective aperture has to be selected to obtain this type of images, allowing much
beams, including, or not, the direct beam to pass. If the resolution of the microscope is
sufficiently high and a suitable sample is oriented along, then high-resolution TEM
In the SEM images, there is a conjugate correspondence between the rastering pattern of
the specimen and the rastering pattern used to produce the image on the monitor. The
signal produced by the rastering is collected by the detector and subsequently processed
to generate the image (Fig. 1B). That processing takes the intensity of the signal coming
from a pixel on the specimen and converts it to a grayscale value of the corresponding
values.
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Interestingly, no lens is directly involved in the image forming process. The
magnification is then simply the ratio of the length of the scan C on the CRT to the
length of the scan on the specimen. Changing magnification does not involve changing
any lens current and therefore, focus does not change as magnification is changed and
For obtaining images in sharp focus, the area sampled by the incident electron beam
must be at least as small as the pixel diameter for the selected magnification. Due to the
scattering of the incident electrons, the signals produced are actually generated from a
larger area (perhaps 1.5 to 2 times) than the beam diameter. Therefore, the beam must
be focused to a diameter between 0.5 to 0.7 times the diameter of the magnification.
Contrast C involves the signals produced by the detector for two points A & B on the
sample, which depend on the number of signal electrons emitted from the sample, the
number of these electrons reaching the detector, and its efficiency to record them. The
signal produced by the detector can be modified to change the appearance of the image,
variations. However, it must be taken into account that BSE are produced from the
entire upper half of the interaction volume (Fig. 2) and, therefore, the spatial resolution
The BSE signal is mainly used to obtain information on the specimen composition
(average Z). SEM uses paired detectors to receive BSE (Fig. 15). Addition of signals
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4.2.2 Imaging with SE
secondary electron image depend on how many electrons actually reach the detector.
Given that, SE yield depends on the angle of tilt of the specimen relative to the primary-
electron beam, φ; when the incident electron beam intersects the tilted edges of
topographically high portions of a sample at lower angles, it puts more energy into the
generating a larger signal. Therefore, places where the beam strikes the surface at an
angle have larger volumes of electron escape than the perpendicular incidence (φ = 0).
These effects cause tilted surfaces to appear brighter than flat surfaces, and edges and
Faces oriented towards the detector also generate more secondary electrons. Secondary
electrons that are prevented from reaching the detector do not contribute to the final
image. Therefore, faces oriented towards the detector will be brighter, whereas those in
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